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The map label for this gene is ureD

Identifier: 17546755

GI number: 17546755

Start: 2209115

End: 2210002

Strand: Reverse

Name: ureD

Synonym: RSc2036

Alternate gene names: 17546755

Gene position: 2210002-2209115 (Counterclockwise)

Preceding gene: 17546756

Following gene: 17546754

Centisome position: 59.47

GC content: 72.52

Gene sequence:

>888_bases
ATGCGCCATCCCGATTTTCCCGTTCCGCCCCGGATCGATGCATTCGCCTCCTGGGAAGCCTCGCTGCGGCTCGCATTCGC
GCGCCGGGGCGGGCGCACCGTGCTGGCATCGTGCCGGCACCGGGGGCCGCTGCGCGTGCAGAAGGCGCTGTATCCGGAAG
GCGAGGGCGTCTGCCATGTCGTGCTGCTGCATCCGCCCGCGGGCATCGCCGGCGGCGACGTGCTCGACATCGGCATCGAG
CTGGGTGCCGAGGCGCATGCGGTGCTGACCACACCGGGCGCCACCAAGTGGTACAAGTCGCCCGGCCGCACCGCCATGCA
GCAGGTGGCCATCCGCCTGGACGCCGGCGCGCGGCTCGACTGGCTGCCGCAGGAGAACATCGTTTTCAACCAGGCGCGCC
CGGTCATCGACCTGACGCTGGACCTCGCCCCGGGCGCCGCCGCCATCGGCTGGGACATCACCATGCTCGGCCGTCATGCT
GCCGGCGAGTCCTGGCAGGAAGGCCGCATCGCCATGCACACGCGCCTGCGCTGCGAGGGGCAGCCGCTGTGGATCGAGTC
CACGGCGTTCGATGCCCAGTCGCCCGTGCTGGGCGCGACGACGGGCATGGCCGGCTTTCACGTGGTCGGCACGCTGTGGG
CCGTGGGGGCGGGCGCCACTGAAGCCCTTGCCGAGACACTGGCCGAGCAACTGCCTTACCGCGACGATCTCCGCGCCGGC
GTGACGTGCCTGACGCAAGACGCGCCCGGCCGCCCGAGCGTGCTGCTGCTGCGCGTGCTGGCACGGCGGCCCGAAGACGC
GCGCGCCCTGCTGAGCCAGACCTGGCTGGCGCTGCGCGAACCGATCCATGGCGTGGCGGGCCGTCCGCTGCGCCTGTGGG
CGACGTGA

Upstream 100 bases:

>100_bases
ATTCTCGCGCGCGCGGCGAAAAAGCGGGGCGCGAAGCCGTGCCAAACGGCCGGCATCTCGCTATGATGAAACCCCGTTCC
GCCGCTGCGCTGCACGATTG

Downstream 100 bases:

>100_bases
GCGCGTCGCCCGTCCGCATCCAACCCTTTTAGAGAGCCTCCCGTGGAACTGACCCCGCGCGAAAAAGACAAGCTGCTGAT
CTTCACCGCCGCCTTGCTGG

Product: urease accessory protein ureD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 295

Protein sequence:

>295_residues
MRHPDFPVPPRIDAFASWEASLRLAFARRGGRTVLASCRHRGPLRVQKALYPEGEGVCHVVLLHPPAGIAGGDVLDIGIE
LGAEAHAVLTTPGATKWYKSPGRTAMQQVAIRLDAGARLDWLPQENIVFNQARPVIDLTLDLAPGAAAIGWDITMLGRHA
AGESWQEGRIAMHTRLRCEGQPLWIESTAFDAQSPVLGATTGMAGFHVVGTLWAVGAGATEALAETLAEQLPYRDDLRAG
VTCLTQDAPGRPSVLLLRVLARRPEDARALLSQTWLALREPIHGVAGRPLRLWAT

Sequences:

>Translated_295_residues
MRHPDFPVPPRIDAFASWEASLRLAFARRGGRTVLASCRHRGPLRVQKALYPEGEGVCHVVLLHPPAGIAGGDVLDIGIE
LGAEAHAVLTTPGATKWYKSPGRTAMQQVAIRLDAGARLDWLPQENIVFNQARPVIDLTLDLAPGAAAIGWDITMLGRHA
AGESWQEGRIAMHTRLRCEGQPLWIESTAFDAQSPVLGATTGMAGFHVVGTLWAVGAGATEALAETLAEQLPYRDDLRAG
VTCLTQDAPGRPSVLLLRVLARRPEDARALLSQTWLALREPIHGVAGRPLRLWAT
>Mature_295_residues
MRHPDFPVPPRIDAFASWEASLRLAFARRGGRTVLASCRHRGPLRVQKALYPEGEGVCHVVLLHPPAGIAGGDVLDIGIE
LGAEAHAVLTTPGATKWYKSPGRTAMQQVAIRLDAGARLDWLPQENIVFNQARPVIDLTLDLAPGAAAIGWDITMLGRHA
AGESWQEGRIAMHTRLRCEGQPLWIESTAFDAQSPVLGATTGMAGFHVVGTLWAVGAGATEALAETLAEQLPYRDDLRAG
VTCLTQDAPGRPSVLLLRVLARRPEDARALLSQTWLALREPIHGVAGRPLRLWAT

Specific function: Required for maturation of urease via the functional incorporation of the urease nickel metallocenter

COG id: COG0829

COG function: function code O; Urease accessory protein UreH

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ureD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): URED_RALSO (Q8XXS7)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_520157.1
- GeneID:   1220876
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc2036
- NMPDR:   fig|267608.1.peg.2036
- HOGENOM:   HBG711156
- OMA:   VQRPLYP
- ProtClustDB:   CLSK897186
- BioCyc:   RSOL267608:RSC2036-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01384
- InterPro:   IPR002669

Pfam domain/function: PF01774 UreD

EC number: NA

Molecular weight: Translated: 31826; Mature: 31826

Theoretical pI: Translated: 8.03; Mature: 8.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRHPDFPVPPRIDAFASWEASLRLAFARRGGRTVLASCRHRGPLRVQKALYPEGEGVCHV
CCCCCCCCCCCCCHHHCCCHHEEEEEHHCCCHHHHHHHCCCCCCEEHHHCCCCCCCEEEE
VLLHPPAGIAGGDVLDIGIELGAEAHAVLTTPGATKWYKSPGRTAMQQVAIRLDAGARLD
EEEECCCCCCCCCEEEEEEECCCCCEEEEECCCCCHHHCCCCHHHHHHHHEEECCCCCEE
WLPQENIVFNQARPVIDLTLDLAPGAAAIGWDITMLGRHAAGESWQEGRIAMHTRLRCEG
CCCCCCEEECCCCCEEEEEEECCCCCEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECC
QPLWIESTAFDAQSPVLGATTGMAGFHVVGTLWAVGAGATEALAETLAEQLPYRDDLRAG
CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHC
VTCLTQDAPGRPSVLLLRVLARRPEDARALLSQTWLALREPIHGVAGRPLRLWAT
CEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
>Mature Secondary Structure
MRHPDFPVPPRIDAFASWEASLRLAFARRGGRTVLASCRHRGPLRVQKALYPEGEGVCHV
CCCCCCCCCCCCCHHHCCCHHEEEEEHHCCCHHHHHHHCCCCCCEEHHHCCCCCCCEEEE
VLLHPPAGIAGGDVLDIGIELGAEAHAVLTTPGATKWYKSPGRTAMQQVAIRLDAGARLD
EEEECCCCCCCCCEEEEEEECCCCCEEEEECCCCCHHHCCCCHHHHHHHHEEECCCCCEE
WLPQENIVFNQARPVIDLTLDLAPGAAAIGWDITMLGRHAAGESWQEGRIAMHTRLRCEG
CCCCCCEEECCCCCEEEEEEECCCCCEECCEEEEEECCCCCCCCCCCCCEEEEEEEEECC
QPLWIESTAFDAQSPVLGATTGMAGFHVVGTLWAVGAGATEALAETLAEQLPYRDDLRAG
CEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHC
VTCLTQDAPGRPSVLLLRVLARRPEDARALLSQTWLALREPIHGVAGRPLRLWAT
CEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852