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The map label for this gene is exbD1 [H]

Identifier: 17546684

GI number: 17546684

Start: 2143589

End: 2144002

Strand: Direct

Name: exbD1 [H]

Synonym: RSc1965

Alternate gene names: 17546684

Gene position: 2143589-2144002 (Clockwise)

Preceding gene: 17546683

Following gene: 17546685

Centisome position: 57.68

GC content: 63.77

Gene sequence:

>414_bases
ATGGCTTTCGGAACCTTCGACAACGATGACGAGGTGATGAGCGAGATCAACATGACGCCGCTGGTGGACGTCATGCTGGT
GCTGCTGATCATCTTCATCATCACCATCCCGGTGATCAACCACGCCGTGAAGATCGACCTGCCGCGCGCGACCAACAAGC
CCGACGACGCCAAGCCGCAGAGCGTCAATGTCGAGATCGACGCCAAGGGCCTGGTGTACTGGAACAACCAGCCGGTCGAC
GATGCCACGCTGGAGGCCGACATCGTGCAGGCCGCACGGCAACAGCCCCAGCCCGAGATGCATCTGCGCGCGGATCGCAG
CGTCCGCTACGAGCGCGTCGCCCAGGTGATGGCCGCCATCCAGCGCGGCGGCCTGGCGCGCATCGGCTTCGTGACCGAAC
CGATGCACAACTGA

Upstream 100 bases:

>100_bases
CGCCTACTTCGTGACCGGCGCGCGCCTGCGCCCGGGCAACGCACGCCAGGACGACGCGAGCGTGCGCCTGGCCTCGGTCA
AGCCGCAATAAGGAACGGTC

Downstream 100 bases:

>100_bases
CGCACCCGCCCCGCCATACGAGAACCCCCGCCACTGCGCGGGGGTTCGTCTTTTTGCGTACGCCGCAGACGGCGAGCCTC
ACGGCGTCAGCGTTTTGTCA

Product: biopolymer transport transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MAFGTFDNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRATNKPDDAKPQSVNVEIDAKGLVYWNNQPVD
DATLEADIVQAARQQPQPEMHLRADRSVRYERVAQVMAAIQRGGLARIGFVTEPMHN

Sequences:

>Translated_137_residues
MAFGTFDNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRATNKPDDAKPQSVNVEIDAKGLVYWNNQPVD
DATLEADIVQAARQQPQPEMHLRADRSVRYERVAQVMAAIQRGGLARIGFVTEPMHN
>Mature_136_residues
AFGTFDNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRATNKPDDAKPQSVNVEIDAKGLVYWNNQPVDD
ATLEADIVQAARQQPQPEMHLRADRSVRYERVAQVMAAIQRGGLARIGFVTEPMHN

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=126, Percent_Identity=34.1269841269841, Blast_Score=84, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15320; Mature: 15189

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGTFDNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRATNKPDDAKPQ
CCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC
SVNVEIDAKGLVYWNNQPVDDATLEADIVQAARQQPQPEMHLRADRSVRYERVAQVMAAI
EEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHH
QRGGLARIGFVTEPMHN
HHCCCEEECCCCCCCCC
>Mature Secondary Structure 
AFGTFDNDDEVMSEINMTPLVDVMLVLLIIFIITIPVINHAVKIDLPRATNKPDDAKPQ
CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCC
SVNVEIDAKGLVYWNNQPVDDATLEADIVQAARQQPQPEMHLRADRSVRYERVAQVMAAI
EEEEEECCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHHHH
QRGGLARIGFVTEPMHN
HHCCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]