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The map label for this gene is occR [H]

Identifier: 17546599

GI number: 17546599

Start: 2063472

End: 2064446

Strand: Direct

Name: occR [H]

Synonym: RSc1880

Alternate gene names: 17546599

Gene position: 2063472-2064446 (Clockwise)

Preceding gene: 17546598

Following gene: 17546600

Centisome position: 55.52

GC content: 71.38

Gene sequence:

>975_bases
ATGGAACTCCGACAACTCGAAGCCTTTGCCGCCGTCATGTCGACGGGCAGCGTCACCGCAGCGGGCAAGCTGCTGGGCCG
CTCCCAACCGGCCATCAGCCGGCTCATCCAGGACCTGGAAGCGGAGATCGGCTATGCGCTGTTCACCCGCTCGGGGCCGC
GCGTATCGCCCACCGAGCAGGGCTTCCTGCTCTATGAGGACGTCGAACACACCCTGATCAGCCTGCGCCAGATCCGCACG
CGCGCCGAGGAAATCGCGCGCGGCGAGGCGCGGCCGCTGCGCCTGGCTGCCACCTCGGCGCTGGCGGCCGGGCTGCTGCC
GGCGGCCCTGGCCGATGATGCCGAACTCGGCCGGCATATCCAGATCCGCAGCGCATCGCCCGAGCAGGTGGTGCATGCGG
TGCTGACCGGCGCGGCCGACCTGGGCGTCAGCAGCCTGCCGCTGGAGCACCGCGGAGTGACCGTGCACTGGATCGGCGAA
GCCGCCTGCGTGGCCGCCGTACAGGCGGGCGATCCGCTGGCCGCGGGCGACCGCGTGGCGCTGGCCGACTGCGGCGGGCG
CCGCATCATCACCATGCACAACCCGTATCGGCTGCGGCGCCGGCTGGACTTTGCCCTGGCGCAGGCCGGTGTCACGCCCG
CCGAGCTGATCGAGACCAATGCGTCGTTCAATGCCCTGACCACCGTGCGCGCGGGCCTGGGCGTGGCGCTGCTGGAACCC
GTCACGGCCTACGGCGTGCCGATCGAGGGCGTGACGGTGCGCCCGATCGATGTGAGCATCCCCTTCTTCTTCGGCGTGAT
CACGCCCGAGGCGCGCCGGCCGTCGCCGGCTGTGACCGCGCTGATCGACGCCCTGTCCCGGGCCGCGCAGCGCCTGCTGC
CCGATTGCAAGCTGCATGACCCGGCCCGCCACGCCAGCATGCTGCAGGTGCTGTACGGCGAACCGCTCAACGAAACCGAA
GGCGCGTCCGCATGA

Upstream 100 bases:

>100_bases
AATCACATGAGCACATAAGAAAATACTATTTGGAATCCACATACTGCCTCTACCAGAATGCACCGACTCTATGCATTGAT
GGGAATCAAGCAGGTAGTAG

Downstream 100 bases:

>100_bases
CCGCGGGCCCGCAAGCACACGGCCACGCGCCGCAGACCGCCGGACTGGCGGCGCTGGAAGCCCGCCTGCGCCAGGATCTC
GCCTGGCTCGAACTGCCCGC

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 324; Mature: 324

Protein sequence:

>324_residues
MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTRSGPRVSPTEQGFLLYEDVEHTLISLRQIRT
RAEEIARGEARPLRLAATSALAAGLLPAALADDAELGRHIQIRSASPEQVVHAVLTGAADLGVSSLPLEHRGVTVHWIGE
AACVAAVQAGDPLAAGDRVALADCGGRRIITMHNPYRLRRRLDFALAQAGVTPAELIETNASFNALTTVRAGLGVALLEP
VTAYGVPIEGVTVRPIDVSIPFFFGVITPEARRPSPAVTALIDALSRAAQRLLPDCKLHDPARHASMLQVLYGEPLNETE
GASA

Sequences:

>Translated_324_residues
MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTRSGPRVSPTEQGFLLYEDVEHTLISLRQIRT
RAEEIARGEARPLRLAATSALAAGLLPAALADDAELGRHIQIRSASPEQVVHAVLTGAADLGVSSLPLEHRGVTVHWIGE
AACVAAVQAGDPLAAGDRVALADCGGRRIITMHNPYRLRRRLDFALAQAGVTPAELIETNASFNALTTVRAGLGVALLEP
VTAYGVPIEGVTVRPIDVSIPFFFGVITPEARRPSPAVTALIDALSRAAQRLLPDCKLHDPARHASMLQVLYGEPLNETE
GASA
>Mature_324_residues
MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTRSGPRVSPTEQGFLLYEDVEHTLISLRQIRT
RAEEIARGEARPLRLAATSALAAGLLPAALADDAELGRHIQIRSASPEQVVHAVLTGAADLGVSSLPLEHRGVTVHWIGE
AACVAAVQAGDPLAAGDRVALADCGGRRIITMHNPYRLRRRLDFALAQAGVTPAELIETNASFNALTTVRAGLGVALLEP
VTAYGVPIEGVTVRPIDVSIPFFFGVITPEARRPSPAVTALIDALSRAAQRLLPDCKLHDPARHASMLQVLYGEPLNETE
GASA

Specific function: Positive regulatory protein for the occ operon involved in octopine catabolism and uptake. Also acts as a negative regulator of its expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789204, Length=299, Percent_Identity=29.4314381270903, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788481, Length=179, Percent_Identity=32.4022346368715, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI2367136, Length=289, Percent_Identity=25.2595155709343, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI157672245, Length=231, Percent_Identity=25.1082251082251, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787879, Length=269, Percent_Identity=28.6245353159851, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=27.710843373494, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34344; Mature: 34344

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTRSGPRVSPTEQ
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCC
GFLLYEDVEHTLISLRQIRTRAEEIARGEARPLRLAATSALAAGLLPAALADDAELGRHI
CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCHHCCCEE
QIRSASPEQVVHAVLTGAADLGVSSLPLEHRGVTVHWIGEAACVAAVQAGDPLAAGDRVA
EEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCEEE
LADCGGRRIITMHNPYRLRRRLDFALAQAGVTPAELIETNASFNALTTVRAGLGVALLEP
EEECCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHH
VTAYGVPIEGVTVRPIDVSIPFFFGVITPEARRPSPAVTALIDALSRAAQRLLPDCKLHD
HHHCCCCCCCEEEEEEEEECCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
PARHASMLQVLYGEPLNETEGASA
HHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MELRQLEAFAAVMSTGSVTAAGKLLGRSQPAISRLIQDLEAEIGYALFTRSGPRVSPTEQ
CCHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCEEEEECCCCCCCCCCC
GFLLYEDVEHTLISLRQIRTRAEEIARGEARPLRLAATSALAAGLLPAALADDAELGRHI
CEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHCCCHHCCCEE
QIRSASPEQVVHAVLTGAADLGVSSLPLEHRGVTVHWIGEAACVAAVQAGDPLAAGDRVA
EEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCCCEEE
LADCGGRRIITMHNPYRLRRRLDFALAQAGVTPAELIETNASFNALTTVRAGLGVALLEP
EEECCCCEEEEECCHHHHHHHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHHCCCHHHHHH
VTAYGVPIEGVTVRPIDVSIPFFFGVITPEARRPSPAVTALIDALSRAAQRLLPDCKLHD
HHHCCCCCCCEEEEEEEEECCHHEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC
PARHASMLQVLYGEPLNETEGASA
HHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA