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The map label for this gene is p49 [H]

Identifier: 17546553

GI number: 17546553

Start: 2005547

End: 2007154

Strand: Reverse

Name: p49 [H]

Synonym: RSc1834

Alternate gene names: 17546553

Gene position: 2007154-2005547 (Counterclockwise)

Preceding gene: 17546554

Following gene: 17546552

Centisome position: 54.01

GC content: 72.51

Gene sequence:

>1608_bases
ATGACCGCATCGTCGGATCCGCACGTCATCTTCGTCGGCAGCGGCATCAACTCGCTGGTCAGCGCGGCGCTGCTGGCCAC
GCGCGGCAAGCGTGTGCTGGTGCTCGAGCGCAATGACCGGCTCGGCGGCTGCATCCGCACCGAAGAGCTGTTTCCCGGCT
ACCACCATGAGGTGATGTCTTCGTGGTACCCGCTGTTCGTCGGCAGCCCGGGCTATGCCGAGCTCAAGCCCGCGCTGGAG
CAGGCGGGGCTGGCGTTCCTCTGCCCCGACTACACCACGGGCCTGGTCTGGCCGGACGGCCGCGGCCTGGCGCTCAAGCA
GGATCTGAACGATGCGGTGCAACGCCTGGAGGCCCTGGCGCCCGGAGACGGCGCGGCCCTGGGCGCCATGGCCGCGCGCC
TGTTCGGCCCCGATGCCGCGCTCACGTTCGGCCTGCTGGGCCAGAATCCGTACGGCTGGGCGATGCTCAAGCTGCTGTTC
GGGCAGTGGCGCCAGCGCGGCACCGACGGCCTGGCGGCCTTCGCGGCCGACGCGCTGGAGACCTTCCGGCGCTGGTCGGA
ACGCACGCTGCGCTCCGACCTGGCCCGCGCGCTGATCGCGCCGTGGGTACTGCACTCCGGGCTCGGCCCCGATGACGCCG
GATCGGCCCTGATCGGCAAGCTGACCTTCGCCTCGGTGGTCAGCGGCGGCATGCCCGTGGTCAAGGGCGGCGGCAGCCGG
CTGGTCGAAGCGCTCGCGCGGGTCATCGAGCAGCACGGCGGCACGCTGATGACCGGCACGCCGGTCGAGCAGGTGCTGAC
CGAGGGCCAGGGCCGCCGCCGGCGCGCCACCGGGGTGGCAGTGACCGGGGGCCGGCGCTTGCGTGCCCAGCAAGCCGTCG
TCTGCAACGTCACGCCCCAGCAGCTGTACGGCCGCCTGCTGCCCGAGATGCCGCAGCCGCTGCGCGAGCGCGCCGAAGGC
TATCGCTACGGGCGCGGCGACATGCAGATCCACTTCGCGCTGAACGCGCCGCCCGCCTGGCGCGAGGCGGAACTCTGCAA
GGTGCCGCTGGTGCACCTGACCGAGAGCCTGGAGCAGGTCTGCGCCTCGGTCACGCAAGCCAACAACGGCCTGCTGCCGA
GCCGCCCCACCCTCGGCATCGGCCAGCCGACGGTGGCCGACCCATCGCGCGCGCCCGCGGGCGGCTGGATCCTGTGGATC
CAGATGCAGGAGCTGCCGACGCGGCTCAAGGGCGATGCGGCGGGCGAGATTCCCGTGCCCGCCGACGGCCGCTGGAACGA
AGCGGTGCGCGAAGCGTTCGCGGACCGCGTGCAGGCACGGCTCGAACGTGTCATGCCGGGGCTCGCCGAACGCATCGTCG
GCCGGCGCGCCTATTCGCCGGCGGACCTGGAGGTGTTGAACTGCAACCTGGTCGGCGGCGATCCTTACTCCGGCGTCTGC
TCGCCCGACCAGTTTTTCTGGCTGCGTCCGTTCGCGGGCAGCCAGGGCGCCCGCGCGCACCGCACGCCGCTGGCCAACGT
GTTCCACATCGGCGCCAGCACGCACCCGGGACCGGGGCTGGGCGCCGGCTCGGGGTTCATGGTGGCCCAGCACCTGAGTC
CGCGCTAG

Upstream 100 bases:

>100_bases
TCAGCTGCCGCCGCGGGGGGCGTTCATCCTGGCGGCGCCGCTCAAGATCGAGGGCGGCTCGGGCAGCCCGCTGCGCGTGC
TCGCGCTGGTGGAGTGAGCC

Downstream 100 bases:

>100_bases
CGGGCCACGCACACGCTGTCATCCGTCGATCGTCCCGGTCCGACCCGGCCGGGACGGGGCCGGCCTCGTCCGTTTTTTCT
CAACCATGGTCAAGGAAAAC

Product: transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 534

Protein sequence:

>535_residues
MTASSDPHVIFVGSGINSLVSAALLATRGKRVLVLERNDRLGGCIRTEELFPGYHHEVMSSWYPLFVGSPGYAELKPALE
QAGLAFLCPDYTTGLVWPDGRGLALKQDLNDAVQRLEALAPGDGAALGAMAARLFGPDAALTFGLLGQNPYGWAMLKLLF
GQWRQRGTDGLAAFAADALETFRRWSERTLRSDLARALIAPWVLHSGLGPDDAGSALIGKLTFASVVSGGMPVVKGGGSR
LVEALARVIEQHGGTLMTGTPVEQVLTEGQGRRRRATGVAVTGGRRLRAQQAVVCNVTPQQLYGRLLPEMPQPLRERAEG
YRYGRGDMQIHFALNAPPAWREAELCKVPLVHLTESLEQVCASVTQANNGLLPSRPTLGIGQPTVADPSRAPAGGWILWI
QMQELPTRLKGDAAGEIPVPADGRWNEAVREAFADRVQARLERVMPGLAERIVGRRAYSPADLEVLNCNLVGGDPYSGVC
SPDQFFWLRPFAGSQGARAHRTPLANVFHIGASTHPGPGLGAGSGFMVAQHLSPR

Sequences:

>Translated_535_residues
MTASSDPHVIFVGSGINSLVSAALLATRGKRVLVLERNDRLGGCIRTEELFPGYHHEVMSSWYPLFVGSPGYAELKPALE
QAGLAFLCPDYTTGLVWPDGRGLALKQDLNDAVQRLEALAPGDGAALGAMAARLFGPDAALTFGLLGQNPYGWAMLKLLF
GQWRQRGTDGLAAFAADALETFRRWSERTLRSDLARALIAPWVLHSGLGPDDAGSALIGKLTFASVVSGGMPVVKGGGSR
LVEALARVIEQHGGTLMTGTPVEQVLTEGQGRRRRATGVAVTGGRRLRAQQAVVCNVTPQQLYGRLLPEMPQPLRERAEG
YRYGRGDMQIHFALNAPPAWREAELCKVPLVHLTESLEQVCASVTQANNGLLPSRPTLGIGQPTVADPSRAPAGGWILWI
QMQELPTRLKGDAAGEIPVPADGRWNEAVREAFADRVQARLERVMPGLAERIVGRRAYSPADLEVLNCNLVGGDPYSGVC
SPDQFFWLRPFAGSQGARAHRTPLANVFHIGASTHPGPGLGAGSGFMVAQHLSPR
>Mature_534_residues
TASSDPHVIFVGSGINSLVSAALLATRGKRVLVLERNDRLGGCIRTEELFPGYHHEVMSSWYPLFVGSPGYAELKPALEQ
AGLAFLCPDYTTGLVWPDGRGLALKQDLNDAVQRLEALAPGDGAALGAMAARLFGPDAALTFGLLGQNPYGWAMLKLLFG
QWRQRGTDGLAAFAADALETFRRWSERTLRSDLARALIAPWVLHSGLGPDDAGSALIGKLTFASVVSGGMPVVKGGGSRL
VEALARVIEQHGGTLMTGTPVEQVLTEGQGRRRRATGVAVTGGRRLRAQQAVVCNVTPQQLYGRLLPEMPQPLRERAEGY
RYGRGDMQIHFALNAPPAWREAELCKVPLVHLTESLEQVCASVTQANNGLLPSRPTLGIGQPTVADPSRAPAGGWILWIQ
MQELPTRLKGDAAGEIPVPADGRWNEAVREAFADRVQARLERVMPGLAERIVGRRAYSPADLEVLNCNLVGGDPYSGVCS
PDQFFWLRPFAGSQGARAHRTPLANVFHIGASTHPGPGLGAGSGFMVAQHLSPR

Specific function: Unknown

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI229577391, Length=558, Percent_Identity=26.5232974910394, Blast_Score=121, Evalue=2e-27,
Organism=Caenorhabditis elegans, GI17540238, Length=551, Percent_Identity=23.049001814882, Blast_Score=107, Evalue=2e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57337; Mature: 57206

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASSDPHVIFVGSGINSLVSAALLATRGKRVLVLERNDRLGGCIRTEELFPGYHHEVMS
CCCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHHHCCCHHHHHHH
SWYPLFVGSPGYAELKPALEQAGLAFLCPDYTTGLVWPDGRGLALKQDLNDAVQRLEALA
CCCCEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
PGDGAALGAMAARLFGPDAALTFGLLGQNPYGWAMLKLLFGQWRQRGTDGLAAFAADALE
CCCCHHHHHHHHHHCCCCHHHEEHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
TFRRWSERTLRSDLARALIAPWVLHSGLGPDDAGSALIGKLTFASVVSGGMPVVKGGGSR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCHHH
LVEALARVIEQHGGTLMTGTPVEQVLTEGQGRRRRATGVAVTGGRRLRAQQAVVCNVTPQ
HHHHHHHHHHHCCCEEEECCCHHHHHHCCCCCCEECCCEEEECCCHHCCCCEEEECCCHH
QLYGRLLPEMPQPLRERAEGYRYGRGDMQIHFALNAPPAWREAELCKVPLVHLTESLEQV
HHHHHHHHCCCHHHHHHHHCCEECCCCEEEEEEECCCCCCCCCHHHHCCHHHHHHHHHHH
CASVTQANNGLLPSRPTLGIGQPTVADPSRAPAGGWILWIQMQELPTRLKGDAAGEIPVP
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCHHHCCCCCCCCCCC
ADGRWNEAVREAFADRVQARLERVMPGLAERIVGRRAYSPADLEVLNCNLVGGDPYSGVC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCC
SPDQFFWLRPFAGSQGARAHRTPLANVFHIGASTHPGPGLGAGSGFMVAQHLSPR
CCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCC
>Mature Secondary Structure 
TASSDPHVIFVGSGINSLVSAALLATRGKRVLVLERNDRLGGCIRTEELFPGYHHEVMS
CCCCCCCEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHHHCCCHHHHHHH
SWYPLFVGSPGYAELKPALEQAGLAFLCPDYTTGLVWPDGRGLALKQDLNDAVQRLEALA
CCCCEEECCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
PGDGAALGAMAARLFGPDAALTFGLLGQNPYGWAMLKLLFGQWRQRGTDGLAAFAADALE
CCCCHHHHHHHHHHCCCCHHHEEHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
TFRRWSERTLRSDLARALIAPWVLHSGLGPDDAGSALIGKLTFASVVSGGMPVVKGGGSR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEECCHHH
LVEALARVIEQHGGTLMTGTPVEQVLTEGQGRRRRATGVAVTGGRRLRAQQAVVCNVTPQ
HHHHHHHHHHHCCCEEEECCCHHHHHHCCCCCCEECCCEEEECCCHHCCCCEEEECCCHH
QLYGRLLPEMPQPLRERAEGYRYGRGDMQIHFALNAPPAWREAELCKVPLVHLTESLEQV
HHHHHHHHCCCHHHHHHHHCCEECCCCEEEEEEECCCCCCCCCHHHHCCHHHHHHHHHHH
CASVTQANNGLLPSRPTLGIGQPTVADPSRAPAGGWILWIQMQELPTRLKGDAAGEIPVP
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEHHHHCHHHCCCCCCCCCCC
ADGRWNEAVREAFADRVQARLERVMPGLAERIVGRRAYSPADLEVLNCNLVGGDPYSGVC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCC
SPDQFFWLRPFAGSQGARAHRTPLANVFHIGASTHPGPGLGAGSGFMVAQHLSPR
CCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3453116 [H]