| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is serB [C]
Identifier: 17546359
GI number: 17546359
Start: 1762107
End: 1762964
Strand: Reverse
Name: serB [C]
Synonym: RSc1640
Alternate gene names: 17546359
Gene position: 1762964-1762107 (Counterclockwise)
Preceding gene: 17546360
Following gene: 17546349
Centisome position: 47.44
GC content: 66.32
Gene sequence:
>858_bases ATGCCCGTCGTCCTGCAAAGCCTGTCGCCGCTGTCCTCCAGCGATATCGAATCCGTCCGCGGCCTGTTCGGCCACGCCAC GTACGCAATGCGCGCGCCCAACGTCGCCGTCATCGAATGGGTGCACGAACTGCCCAGCGAACTGCGCGTGCAGCTCGACG CCATCTGCGCCAACCTGAAGCTGGACTACGCCTGGATTCCCGACGAGTGGACCTTCGGCGACTTCCGCGTGCTGGCGATG GACATGGACTCGACCCTCATCACCATCGAGTGCATCGACGAGATCGCGGACTTCTGCGGCCTCAAGCCACAGGTGGCGGC CATCACCGAAGCCTCGATGCGCGGCGAGATCAAGGATTTCAACGAAAGCCTGACGCGCCGGGTGGAGCTGCTCAAGGGCC TGGACGCGAGCGTCCTGGAGCGCGTCTACGCCGAACGCCTGCAGCTGTCGCCCGGTGCCGAGCACATGCTCAAGGCCGTG CAGGCGCTGGGCATCCGCACCCTGCTGGTGTCGGGCGGCTTCGATTTCTTCACCTCGCGCCTGCAGGAACGCCTGGGCCT GGACCGCACGCGCGCCAACACGCTGGAGATCGTCGACGGCAAGCTCACCGGCCGCGTGCTCGGCGAGATCGTCAATGCGG ATGTGAAGGCGCAGACGCTCAAGGCGTTCTGCCACGACCTGGGCGTGACGCCGCAGGAAGCCATCGCCATGGGCGACGGC TCGAACGACCTGAAGATGATGGGCGCGGCGGGGCTGTCGGTGGCCTTCCGCGCCAAGCCCATCGTGCAGGCACAGGCCGA CGTGGCGTTCAACGTCGTCGGCCTGGACGGCCTGCTCAATCTTTTCCCGCAGCCGTAA
Upstream 100 bases:
>100_bases TGGCGGCGGCCCGCCTGTCGGTGGGGCGCCATCCCGGCGGAGGCGTTCGCTACAATAGCGGGCTTCCTCGGCGCTTCATT TCCCGTTTTTCCGCCTCTCC
Downstream 100 bases:
>100_bases GCGCCACGGCAACGCCCTGCGGGCCGCTCAGGCCGCCCGCAGGTGCGCTTCCATCGCCTTCTTCAGGTCGGCGATCAGGT CGCGCGGGTCTTCCAGGCCG
Product: phosphoserine phosphatase
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MPVVLQSLSPLSSSDIESVRGLFGHATYAMRAPNVAVIEWVHELPSELRVQLDAICANLKLDYAWIPDEWTFGDFRVLAM DMDSTLITIECIDEIADFCGLKPQVAAITEASMRGEIKDFNESLTRRVELLKGLDASVLERVYAERLQLSPGAEHMLKAV QALGIRTLLVSGGFDFFTSRLQERLGLDRTRANTLEIVDGKLTGRVLGEIVNADVKAQTLKAFCHDLGVTPQEAIAMGDG SNDLKMMGAAGLSVAFRAKPIVQAQADVAFNVVGLDGLLNLFPQP
Sequences:
>Translated_285_residues MPVVLQSLSPLSSSDIESVRGLFGHATYAMRAPNVAVIEWVHELPSELRVQLDAICANLKLDYAWIPDEWTFGDFRVLAM DMDSTLITIECIDEIADFCGLKPQVAAITEASMRGEIKDFNESLTRRVELLKGLDASVLERVYAERLQLSPGAEHMLKAV QALGIRTLLVSGGFDFFTSRLQERLGLDRTRANTLEIVDGKLTGRVLGEIVNADVKAQTLKAFCHDLGVTPQEAIAMGDG SNDLKMMGAAGLSVAFRAKPIVQAQADVAFNVVGLDGLLNLFPQP >Mature_284_residues PVVLQSLSPLSSSDIESVRGLFGHATYAMRAPNVAVIEWVHELPSELRVQLDAICANLKLDYAWIPDEWTFGDFRVLAMD MDSTLITIECIDEIADFCGLKPQVAAITEASMRGEIKDFNESLTRRVELLKGLDASVLERVYAERLQLSPGAEHMLKAVQ ALGIRTLLVSGGFDFFTSRLQERLGLDRTRANTLEIVDGKLTGRVLGEIVNADVKAQTLKAFCHDLGVTPQEAIAMGDGS NDLKMMGAAGLSVAFRAKPIVQAQADVAFNVVGLDGLLNLFPQP
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Escherichia coli, GI1790849, Length=206, Percent_Identity=45.6310679611651, Blast_Score=172, Evalue=3e-44, Organism=Saccharomyces cerevisiae, GI6321647, Length=208, Percent_Identity=38.9423076923077, Blast_Score=145, Evalue=5e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF01842 ACT; PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 31073; Mature: 30942
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPVVLQSLSPLSSSDIESVRGLFGHATYAMRAPNVAVIEWVHELPSELRVQLDAICANLK CCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHCE LDYAWIPDEWTFGDFRVLAMDMDSTLITIECIDEIADFCGLKPQVAAITEASMRGEIKDF EEEEECCCCCCCCCEEEEEEECCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHH NESLTRRVELLKGLDASVLERVYAERLQLSPGAEHMLKAVQALGIRTLLVSGGFDFFTSR HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH LQERLGLDRTRANTLEIVDGKLTGRVLGEIVNADVKAQTLKAFCHDLGVTPQEAIAMGDG HHHHHCCCHHCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHEEECCC SNDLKMMGAAGLSVAFRAKPIVQAQADVAFNVVGLDGLLNLFPQP CCCCEECCCCCCEEEEECCCHHEECCCCEEEEECHHHHHHCCCCC >Mature Secondary Structure PVVLQSLSPLSSSDIESVRGLFGHATYAMRAPNVAVIEWVHELPSELRVQLDAICANLK CEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCHHHHHHHHHHHHHHCE LDYAWIPDEWTFGDFRVLAMDMDSTLITIECIDEIADFCGLKPQVAAITEASMRGEIKDF EEEEECCCCCCCCCEEEEEEECCCCEEHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHH NESLTRRVELLKGLDASVLERVYAERLQLSPGAEHMLKAVQALGIRTLLVSGGFDFFTSR HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHH LQERLGLDRTRANTLEIVDGKLTGRVLGEIVNADVKAQTLKAFCHDLGVTPQEAIAMGDG HHHHHCCCHHCCCEEEEECCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHEEECCC SNDLKMMGAAGLSVAFRAKPIVQAQADVAFNVVGLDGLLNLFPQP CCCCEECCCCCCEEEEECCCHHEECCCCEEEEECHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]