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The map label for this gene is tex [H]

Identifier: 17546342

GI number: 17546342

Start: 1742266

End: 1744605

Strand: Reverse

Name: tex [H]

Synonym: RSc1623

Alternate gene names: 17546342

Gene position: 1744605-1742266 (Counterclockwise)

Preceding gene: 17546346

Following gene: 17546341

Centisome position: 46.94

GC content: 68.46

Gene sequence:

>2340_bases
ATGACCGATTCCGTGCTGCAAAAGATCGTCTCCCGCATCGCCGCCGAGCTGTCGGTGAAGCCGCAGCAAGTCGCCGCCGC
CGTGCAGCTGCTGGATGAAGGCGCCACCGTGCCGTTCATCGCGCGCTACCGCAAGGAAGCCACCGACAACCTGGACGATA
CGCAACTGCGCAACCTGGAAGAGCGCCTGCTGTACCTGCGCGAGCTGGAAGACCGCCGCGCGGCCATCCTGGCTTCCATC
GAGGAACAGGGCAAGCTGACCGACCCGCTGCGCGCTGCCATCGAGGCAGCCGAGACCAAGCAGGTGCTGGAAGACCTCTA
CCTGCCCTACAAGCCCAAGCGCCGCACCCGCGCGCAGATCGCCCGCGAATGCGGCCTGGAGCCGCTGGCCCAAGCGCTGC
TCGCCGATCCCACGCTCGACCCGCAGGCCGAGGCCGCCAAGTTCGTCAACGGCCAGCCGACCGCGGAAGGCGGCGTGCCC
GACGCCAAGGCCGCGCTGGACGGCGCGCGCGACATCCTCTCCGAACAGTTCGGCGAGACCGCGGAGCTGCTCGGCAAGGT
GCGCGACCACCTGTGGAACCAGGGCGTGATCGCCTCCACCGTGGTCGAGGGCAAGGAAACCGCCGAGGAAGAGAAGTTCC
GCGACTACTACGCCTACAGCGAGCCGATCCGCAACATGCCGTCGCACCGCGCGCTGGCGCTGTTCCGCGGCCGCAATGCG
AGCGTGCTGTTCGTCAAGCTGGGCCTGGGCGAAGAGCAGGACGCGATGAGCCCGCATCCGTGCGAAACCATGATCGCGCG
CCATGTCGGCATCGAGAACAAGGGCCGCGCGGCCGACAAATGGCTGTCGGACGTGTGCCGCTGGTGCTGGCGCGTCAAGG
TGCAGCCGCACATCGAGACCGAACTGCTGACGCAGCTGCGCGAATCCGCCGAAGCCGAGGCCATCAAGATCTTCGGCCGC
AACCTGCACGACCTGCTGCTGGCCGCGCCCGCCGGCCCGAAGGCGGTGATGGGCGTCGACCCCGGCATCCGCACCGGCTG
CAAGGTGGCCGTGGTCGACCACACCGGCAAGCTGCTGGAAACCGCCACGATCTATCCCCACGAGCCGCGCCGCGACTGGA
ACGGCTCGCTGGCCACCCTCGCCCGCCTGGCCAAGCAGCACGGCGTGGCGCTGGTGTCGATCGGCAACGGCACCGCCAGC
CGCGAGACCGACAAGCTGGTGCAGGACCTGATGCATCACTTGGCCAAATCAGCACCCGAAATGAAGCTGACCAAGATCGT
GGTGAGCGAGGCCGGCGCATCGGTATATTCGGCCTCCGAGCTGGCGGCCAAGGAATTCCCCGACCTGGACGTGTCGCTGC
GCGGCGCGGTGTCGATCGCCCGCCGCCTGCAGGACCCGCTGGCCGAGCTCGTGAAGATCGACCCGAAGTCGATCGGCGTG
GGCCAATACCAGCACGACGTCAATCAGCGCGAGCTGGCCCGCGCGCTGGACGCCGTGGTCGAGGACTGCGTGAACGCGGT
CGGCGTCGACGTCAACACAGCCTCGACCGCGCTGCTGGCGCGCGTGTCGGGGCTCAACGCGATCCTGGCCAAGAACATCG
TCGAATACCGCGACGCCAACGGCGTGTTCGCCAACCGCGAAGCCCTCAGGCAGGTGCCGCGCCTGGGCGACAAGACCTTC
GAGCAGGCCGCCGGCTTCCTGCGCATCAACAACGGCGACAACCCGCTCGACCGCTCCTCGGTGCACCCGGAAGCGTATCC
GGTGGTGCAGCGCATTCTCGAGCGCATCAAGAAAGGCATCGGCGACGTGCTCGGCAACCGCGAGGCGCTGCGCGGCCTGA
CCGCGCAGGAGTTCACCGACGACAAGTTCGGCCTGCCGACCGTGGTCGACATCCTGGGCGAACTCGAGAAGCCCGGCCGC
GATCCGCGCCCGGAATTCAAGACCGCCACCTTCCAGGACGGCGTGGAAGACATCAAGGACCTGCAGCCCGGCATGGTGCT
GGAAGGCGTGGTGACCAACGTGGCGGCCTTCGGCGCGTTCATCGACATCGGCGTGCACCAGGATGGGCTGGTGCACGTGT
CGGCCCTGTCGACGAAGTTCGTGCGTGATCCGCACGAGGTGGTCAAGCCCGGCCAGATCGTCAAGGTCAAGGTGATGGAG
GTGGACGTCAAGCGCAACCGCATCGGCCTGACGATGCGACTGACCGACGAGCCGGGTCAGGTGCCCGCGCGCAGCGGCGG
CGACCGCCCCGCCGGCGGCAACCGCAACGGCGGCCAGCAGCGCCGCGCACCGGAACCCGCCGGCGCCATGGCCGCGGCGT
TCGCCAAGCTCAAGCGCTGA

Upstream 100 bases:

>100_bases
GCGCCTGTGCAGCCCACGCCATGCCGCGGCGGGATGCCGTCCGGAGTGGACCGCGCGTTATGGCAAAATGCGCGCCTTTC
CATCGCACTCCCTGGAAGCA

Downstream 100 bases:

>100_bases
CGCCCTGCCCGCCCCGTGGTCAACGGCCCGCCCGGTCTTCGGACCCGGCGGGCTTTTTCATGGCGCCGATGTGCCCGTTA
CAAGTCCTTACGCGCCTGGA

Product: transcription accessory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 779; Mature: 778

Protein sequence:

>779_residues
MTDSVLQKIVSRIAAELSVKPQQVAAAVQLLDEGATVPFIARYRKEATDNLDDTQLRNLEERLLYLRELEDRRAAILASI
EEQGKLTDPLRAAIEAAETKQVLEDLYLPYKPKRRTRAQIARECGLEPLAQALLADPTLDPQAEAAKFVNGQPTAEGGVP
DAKAALDGARDILSEQFGETAELLGKVRDHLWNQGVIASTVVEGKETAEEEKFRDYYAYSEPIRNMPSHRALALFRGRNA
SVLFVKLGLGEEQDAMSPHPCETMIARHVGIENKGRAADKWLSDVCRWCWRVKVQPHIETELLTQLRESAEAEAIKIFGR
NLHDLLLAAPAGPKAVMGVDPGIRTGCKVAVVDHTGKLLETATIYPHEPRRDWNGSLATLARLAKQHGVALVSIGNGTAS
RETDKLVQDLMHHLAKSAPEMKLTKIVVSEAGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGV
GQYQHDVNQRELARALDAVVEDCVNAVGVDVNTASTALLARVSGLNAILAKNIVEYRDANGVFANREALRQVPRLGDKTF
EQAAGFLRINNGDNPLDRSSVHPEAYPVVQRILERIKKGIGDVLGNREALRGLTAQEFTDDKFGLPTVVDILGELEKPGR
DPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVME
VDVKRNRIGLTMRLTDEPGQVPARSGGDRPAGGNRNGGQQRRAPEPAGAMAAAFAKLKR

Sequences:

>Translated_779_residues
MTDSVLQKIVSRIAAELSVKPQQVAAAVQLLDEGATVPFIARYRKEATDNLDDTQLRNLEERLLYLRELEDRRAAILASI
EEQGKLTDPLRAAIEAAETKQVLEDLYLPYKPKRRTRAQIARECGLEPLAQALLADPTLDPQAEAAKFVNGQPTAEGGVP
DAKAALDGARDILSEQFGETAELLGKVRDHLWNQGVIASTVVEGKETAEEEKFRDYYAYSEPIRNMPSHRALALFRGRNA
SVLFVKLGLGEEQDAMSPHPCETMIARHVGIENKGRAADKWLSDVCRWCWRVKVQPHIETELLTQLRESAEAEAIKIFGR
NLHDLLLAAPAGPKAVMGVDPGIRTGCKVAVVDHTGKLLETATIYPHEPRRDWNGSLATLARLAKQHGVALVSIGNGTAS
RETDKLVQDLMHHLAKSAPEMKLTKIVVSEAGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGV
GQYQHDVNQRELARALDAVVEDCVNAVGVDVNTASTALLARVSGLNAILAKNIVEYRDANGVFANREALRQVPRLGDKTF
EQAAGFLRINNGDNPLDRSSVHPEAYPVVQRILERIKKGIGDVLGNREALRGLTAQEFTDDKFGLPTVVDILGELEKPGR
DPRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVME
VDVKRNRIGLTMRLTDEPGQVPARSGGDRPAGGNRNGGQQRRAPEPAGAMAAAFAKLKR
>Mature_778_residues
TDSVLQKIVSRIAAELSVKPQQVAAAVQLLDEGATVPFIARYRKEATDNLDDTQLRNLEERLLYLRELEDRRAAILASIE
EQGKLTDPLRAAIEAAETKQVLEDLYLPYKPKRRTRAQIARECGLEPLAQALLADPTLDPQAEAAKFVNGQPTAEGGVPD
AKAALDGARDILSEQFGETAELLGKVRDHLWNQGVIASTVVEGKETAEEEKFRDYYAYSEPIRNMPSHRALALFRGRNAS
VLFVKLGLGEEQDAMSPHPCETMIARHVGIENKGRAADKWLSDVCRWCWRVKVQPHIETELLTQLRESAEAEAIKIFGRN
LHDLLLAAPAGPKAVMGVDPGIRTGCKVAVVDHTGKLLETATIYPHEPRRDWNGSLATLARLAKQHGVALVSIGNGTASR
ETDKLVQDLMHHLAKSAPEMKLTKIVVSEAGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVG
QYQHDVNQRELARALDAVVEDCVNAVGVDVNTASTALLARVSGLNAILAKNIVEYRDANGVFANREALRQVPRLGDKTFE
QAAGFLRINNGDNPLDRSSVHPEAYPVVQRILERIKKGIGDVLGNREALRGLTAQEFTDDKFGLPTVVDILGELEKPGRD
PRPEFKTATFQDGVEDIKDLQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVMEV
DVKRNRIGLTMRLTDEPGQVPARSGGDRPAGGNRNGGQQRRAPEPAGAMAAAFAKLKR

Specific function: Transcription accessory protein. Exact function not known [H]

COG id: COG2183

COG function: function code K; Transcriptional accessory protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Homo sapiens, GI221136781, Length=821, Percent_Identity=32.5213154689403, Blast_Score=395, Evalue=1e-109,
Organism=Homo sapiens, GI27597090, Length=561, Percent_Identity=24.0641711229947, Blast_Score=92, Evalue=2e-18,
Organism=Escherichia coli, GI87082262, Length=760, Percent_Identity=63.5526315789474, Blast_Score=929, Evalue=0.0,
Organism=Escherichia coli, GI1787140, Length=82, Percent_Identity=37.8048780487805, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17511129, Length=725, Percent_Identity=29.2413793103448, Blast_Score=247, Evalue=1e-65,
Organism=Caenorhabditis elegans, GI17552892, Length=763, Percent_Identity=20.9698558322412, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI62484314, Length=766, Percent_Identity=30.0261096605744, Blast_Score=345, Evalue=9e-95,
Organism=Drosophila melanogaster, GI24640080, Length=382, Percent_Identity=23.2984293193717, Blast_Score=70, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR022967
- InterPro:   IPR018974
- InterPro:   IPR023097 [H]

Pfam domain/function: PF00575 S1; PF09371 Tex_N [H]

EC number: NA

Molecular weight: Translated: 84994; Mature: 84863

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDSVLQKIVSRIAAELSVKPQQVAAAVQLLDEGATVPFIARYRKEATDNLDDTQLRNLE
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
ERLLYLRELEDRRAAILASIEEQGKLTDPLRAAIEAAETKQVLEDLYLPYKPKRRTRAQI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ARECGLEPLAQALLADPTLDPQAEAAKFVNGQPTAEGGVPDAKAALDGARDILSEQFGET
HHHCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHH
AELLGKVRDHLWNQGVIASTVVEGKETAEEEKFRDYYAYSEPIRNMPSHRALALFRGRNA
HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEEECCCC
SVLFVKLGLGEEQDAMSPHPCETMIARHVGIENKGRAADKWLSDVCRWCWRVKVQPHIET
EEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
ELLTQLRESAEAEAIKIFGRNLHDLLLAAPAGPKAVMGVDPGIRTGCKVAVVDHTGKLLE
HHHHHHHHHHHHHHHHHHCCCHHHHHEECCCCCCEEEECCCCCCCCCEEEEEECCCCHHH
TATIYPHEPRRDWNGSLATLARLAKQHGVALVSIGNGTASRETDKLVQDLMHHLAKSAPE
HCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
MKLTKIVVSEAGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGV
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GQYQHDVNQRELARALDAVVEDCVNAVGVDVNTASTALLARVSGLNAILAKNIVEYRDAN
CHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GVFANREALRQVPRLGDKTFEQAAGFLRINNGDNPLDRSSVHPEAYPVVQRILERIKKGI
CCCCCHHHHHHHHCCCHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GDVLGNREALRGLTAQEFTDDKFGLPTVVDILGELEKPGRDPRPEFKTATFQDGVEDIKD
HHHHCCHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
LQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVME
CCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEHHHHHHHHHCCCHHHCCCCCEEEEEEEE
VDVKRNRIGLTMRLTDEPGQVPARSGGDRPAGGNRNGGQQRRAPEPAGAMAAAFAKLKR
EEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TDSVLQKIVSRIAAELSVKPQQVAAAVQLLDEGATVPFIARYRKEATDNLDDTQLRNLE
CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHH
ERLLYLRELEDRRAAILASIEEQGKLTDPLRAAIEAAETKQVLEDLYLPYKPKRRTRAQI
HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
ARECGLEPLAQALLADPTLDPQAEAAKFVNGQPTAEGGVPDAKAALDGARDILSEQFGET
HHHCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHH
AELLGKVRDHLWNQGVIASTVVEGKETAEEEKFRDYYAYSEPIRNMPSHRALALFRGRNA
HHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEHEEECCCC
SVLFVKLGLGEEQDAMSPHPCETMIARHVGIENKGRAADKWLSDVCRWCWRVKVQPHIET
EEEEEEECCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
ELLTQLRESAEAEAIKIFGRNLHDLLLAAPAGPKAVMGVDPGIRTGCKVAVVDHTGKLLE
HHHHHHHHHHHHHHHHHHCCCHHHHHEECCCCCCEEEECCCCCCCCCEEEEEECCCCHHH
TATIYPHEPRRDWNGSLATLARLAKQHGVALVSIGNGTASRETDKLVQDLMHHLAKSAPE
HCCCCCCCCCCCCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
MKLTKIVVSEAGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGV
HHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GQYQHDVNQRELARALDAVVEDCVNAVGVDVNTASTALLARVSGLNAILAKNIVEYRDAN
CHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GVFANREALRQVPRLGDKTFEQAAGFLRINNGDNPLDRSSVHPEAYPVVQRILERIKKGI
CCCCCHHHHHHHHCCCHHHHHHCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
GDVLGNREALRGLTAQEFTDDKFGLPTVVDILGELEKPGRDPRPEFKTATFQDGVEDIKD
HHHHCCHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH
LQPGMVLEGVVTNVAAFGAFIDIGVHQDGLVHVSALSTKFVRDPHEVVKPGQIVKVKVME
CCCCHHHHHHHHHHHHHHHHHEECCCCCCCEEHHHHHHHHHCCCHHHCCCCCEEEEEEEE
VDVKRNRIGLTMRLTDEPGQVPARSGGDRPAGGNRNGGQQRRAPEPAGAMAAAFAKLKR
EEECCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8755871; 12910271 [H]