| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is blh [H]
Identifier: 17546263
GI number: 17546263
Start: 1650155
End: 1651015
Strand: Direct
Name: blh [H]
Synonym: RSc1544
Alternate gene names: 17546263
Gene position: 1650155-1651015 (Clockwise)
Preceding gene: 17546256
Following gene: 17546265
Centisome position: 44.4
GC content: 68.87
Gene sequence:
>861_bases ATGCCCGCCCAGATTTCGACGTTCTTCGATTCCGATACCTGCACCATGACCTACGTGGTCCATGGCGGGCCGGGCACGCC GTGCGCGGTGATCGATTCGGTGCTCGACTACGATCCCAAATCCGGCCGCACCCGGACCGGCTCGGCGGACCGGGTGGCGG CCTACATCGAGGCGAACGCGCTGCGGGTCGAGTGGCTGCTCGAGACGCATGCCCACGCGGACCACCTGTCGGCCGCGCCG TACCTGCGCAACCGGTTCGGTGGGCGCATTGCCATCGGCGAGCGCATCCGGGTGGTGCAGGGCGTGTTCAAGCCGATCTT CAACCTGGAGCCGTCGTTCCGGCTCGACGGCTCGCAGTTCGACCACCTGTTCGCCGCGGACGAGGTGTTCCGCATCGGCG CGCTGGAAGCGAAGGCGCTGTCGGTGCCCGGTCACACGCCGGCCGACATGGCCTACCAGGTGGGCGACGCCGTGTTCGTG GGCGATACGCTGTTCATGCCGGATGTCGGCACCGCCCGCTGCGATTTTCCCGGCGGCGACGCGCGCACGCTGTACCAGTC GATCCGCCGCCTGCTGGACTTGCCGCCGCAGACGCGGCTCTACATGTGCCATGACTATCCGCCCGCCGGCCGCGAGGCGA CCTGCGAGACCACGGTGGCCGAGCAGCGCCGCGCCAATATCCATGTGCGCGACGGCGTGACGGAAGACGACTTCGTGCAG ATGCGCACCCGGCGCGACGCCACGCTGGCCATGCCGACGCTGATGCTGCCGTCCATCCAGGTCAACATCCGGGCGGGCGC GCTGCCGCCGGCCGAGCCGAATGGCGTGCGGTATCTGAAGATTCCGCTGAACGCGCTGTGA
Upstream 100 bases:
>100_bases TCGGGGCATGGCGGGCGCGGTTGTTGAAAGGTGCTCTATTGGCAGACAGAATGTCTGACGATATTCTATTAAAATATAGA TTGTTTGGGGAAGTCCTGCC
Downstream 100 bases:
>100_bases TCGTGTCAGCCGGCGCAGGAAGCCAACGCGGCATCCGTCCGCGCTGGGCCGCAGGCCTCCACGCGCGGCCGGTCTTCGTC GCTCGGCGCCGGCCGGCCGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MPAQISTFFDSDTCTMTYVVHGGPGTPCAVIDSVLDYDPKSGRTRTGSADRVAAYIEANALRVEWLLETHAHADHLSAAP YLRNRFGGRIAIGERIRVVQGVFKPIFNLEPSFRLDGSQFDHLFAADEVFRIGALEAKALSVPGHTPADMAYQVGDAVFV GDTLFMPDVGTARCDFPGGDARTLYQSIRRLLDLPPQTRLYMCHDYPPAGREATCETTVAEQRRANIHVRDGVTEDDFVQ MRTRRDATLAMPTLMLPSIQVNIRAGALPPAEPNGVRYLKIPLNAL
Sequences:
>Translated_286_residues MPAQISTFFDSDTCTMTYVVHGGPGTPCAVIDSVLDYDPKSGRTRTGSADRVAAYIEANALRVEWLLETHAHADHLSAAP YLRNRFGGRIAIGERIRVVQGVFKPIFNLEPSFRLDGSQFDHLFAADEVFRIGALEAKALSVPGHTPADMAYQVGDAVFV GDTLFMPDVGTARCDFPGGDARTLYQSIRRLLDLPPQTRLYMCHDYPPAGREATCETTVAEQRRANIHVRDGVTEDDFVQ MRTRRDATLAMPTLMLPSIQVNIRAGALPPAEPNGVRYLKIPLNAL >Mature_285_residues PAQISTFFDSDTCTMTYVVHGGPGTPCAVIDSVLDYDPKSGRTRTGSADRVAAYIEANALRVEWLLETHAHADHLSAAPY LRNRFGGRIAIGERIRVVQGVFKPIFNLEPSFRLDGSQFDHLFAADEVFRIGALEAKALSVPGHTPADMAYQVGDAVFVG DTLFMPDVGTARCDFPGGDARTLYQSIRRLLDLPPQTRLYMCHDYPPAGREATCETTVAEQRRANIHVRDGVTEDDFVQM RTRRDATLAMPTLMLPSIQVNIRAGALPPAEPNGVRYLKIPLNAL
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-B beta-lactamase family [H]
Homologues:
Organism=Homo sapiens, GI41327741, Length=272, Percent_Identity=27.2058823529412, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI221330176, Length=263, Percent_Identity=26.615969581749, Blast_Score=81, Evalue=7e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005939 - InterPro: IPR001279 [H]
Pfam domain/function: PF04273 DUF442; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 31460; Mature: 31329
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAQISTFFDSDTCTMTYVVHGGPGTPCAVIDSVLDYDPKSGRTRTGSADRVAAYIEANA CCCCCCEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEECCE LRVEWLLETHAHADHLSAAPYLRNRFGGRIAIGERIRVVQGVFKPIFNLEPSFRLDGSQF EEEEEEEHHCCCHHHCCCCHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCEEECCCHH DHLFAADEVFRIGALEAKALSVPGHTPADMAYQVGDAVFVGDTLFMPDVGTARCDFPGGD HHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHCCCEEEECCEEECCCCCCCCCCCCCCC ARTLYQSIRRLLDLPPQTRLYMCHDYPPAGREATCETTVAEQRRANIHVRDGVTEDDFVQ HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCEEEEECCCCCHHHHH MRTRRDATLAMPTLMLPSIQVNIRAGALPPAEPNGVRYLKIPLNAL HHHCCCCCEECCEEECCCEEEEEEECCCCCCCCCCEEEEEEECCCC >Mature Secondary Structure PAQISTFFDSDTCTMTYVVHGGPGTPCAVIDSVLDYDPKSGRTRTGSADRVAAYIEANA CCCCCEEECCCCEEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHEEEEEECCE LRVEWLLETHAHADHLSAAPYLRNRFGGRIAIGERIRVVQGVFKPIFNLEPSFRLDGSQF EEEEEEEHHCCCHHHCCCCHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCCCEEECCCHH DHLFAADEVFRIGALEAKALSVPGHTPADMAYQVGDAVFVGDTLFMPDVGTARCDFPGGD HHHHHHHHHHEECCCCEEEEECCCCCCHHHHHHCCCEEEECCEEECCCCCCCCCCCCCCC ARTLYQSIRRLLDLPPQTRLYMCHDYPPAGREATCETTVAEQRRANIHVRDGVTEDDFVQ HHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCEEEEECCCCCHHHHH MRTRRDATLAMPTLMLPSIQVNIRAGALPPAEPNGVRYLKIPLNAL HHHCCCCCEECCEEECCCEEEEEEECCCCCCCCCCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10910347 [H]