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The map label for this gene is yhjC [H]

Identifier: 17546191

GI number: 17546191

Start: 1574832

End: 1575788

Strand: Reverse

Name: yhjC [H]

Synonym: RSc1472

Alternate gene names: 17546191

Gene position: 1575788-1574832 (Counterclockwise)

Preceding gene: 17546195

Following gene: 17546190

Centisome position: 42.4

GC content: 71.26

Gene sequence:

>957_bases
ATGCGAACGACGGACTGGAACGACTGGGACACCTTCTGCACCGTGGCCACGCTCGGCAGCTTCACGCGCGCAGCGGACCG
GCTGGGCCTGCCCAAGTCGTCGGTGAGCACGGCGGTGTCGCGGCTGGAGGGCAAGCTGGGCGCGCGGCTGTTCGAGCGCA
GCACGCGCCGCCTGCGCCTGACCGATGCCGGCGAAGCGCTGCTGCGCGACGCCGGCCCCCTGTTCCAGCGCCTGCGCGAA
GTCTCCGAAGATGCCGCCGCGACGTTCCAGTCGCCGGCCGGCACGCTGCGCATCGCCATGCCGTATGAATTCGCCGCCAG
GCAGTTCGCCGAGGTCGTGCTGGAGGTGATGCGCGAGCATGCCGGTCTGCGCATCGAGGTGGACGTGGCGCCGCGCCAGG
TCGATCCGCTCTCCCAGGGCTACGACATCATGCTGACGGTGCCCCGCGAGCCGCTGCCCGATTCCGGCCTGGTGGCCCAG
CGCGTGTTCGATCTGCGCCGCGCCGTGGTGGTCGCGCCCGCGCTGCTGGACAGGCTCGGGCCCCTGAACCACCCGAACCA
GCTGATCGACTGGCCATGCCTGGGCCTGTCCAGCGAATCCGAATGGCAGTTCCGCGCGCCCGGCGGCGAAACACTCAACC
TGCCGCTCGATTTCCGCATGCGCACCTCCAACAGCGAACTGCGCCTGCAGGCGGCGGTCGCCGGCCTCGGTGTCGCGCGC
ATCACCTCGGCGTTTGCCGAAGAGTTGATCGCCGCCGGTGCACTGCGCGAGGTGCTGGCCGGCTTCCGGTCACCGCCGAT
GCGCGTCTACGCGGTGTTTCCCGGCCGCCGCCTGATGCCGGCCAAGGTCAAGGTCTTCATGGACGCGCTGCATCGCCGCA
TCGAGCAGTCCGCCCGGGCCGGCCCGGGTCCGGAGGCCGATGACCCCACGCCATGGCCGCCCGCGGCCCTGCTTTGA

Upstream 100 bases:

>100_bases
GGCGGAAGGCGTGTGGTCCGTGCTTGGCGTGTTCATGTCGGGATGGTAATTTGCTTGGAAACCCGTGGAAATCGCCGTAT
CACAAATTCATTGTTCAACC

Downstream 100 bases:

>100_bases
ATGCATCGCCTTTTTTTCCTTTGCCACCCGCAAACCATGCCCGCCCCGATCCTTTCCATCGCCCTGCTCACCGCCGCCCT
GCTGTCGACCACCGCCTCCG

Product: transcription regulator protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 318; Mature: 318

Protein sequence:

>318_residues
MRTTDWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGARLFERSTRRLRLTDAGEALLRDAGPLFQRLRE
VSEDAAATFQSPAGTLRIAMPYEFAARQFAEVVLEVMREHAGLRIEVDVAPRQVDPLSQGYDIMLTVPREPLPDSGLVAQ
RVFDLRRAVVVAPALLDRLGPLNHPNQLIDWPCLGLSSESEWQFRAPGGETLNLPLDFRMRTSNSELRLQAAVAGLGVAR
ITSAFAEELIAAGALREVLAGFRSPPMRVYAVFPGRRLMPAKVKVFMDALHRRIEQSARAGPGPEADDPTPWPPAALL

Sequences:

>Translated_318_residues
MRTTDWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGARLFERSTRRLRLTDAGEALLRDAGPLFQRLRE
VSEDAAATFQSPAGTLRIAMPYEFAARQFAEVVLEVMREHAGLRIEVDVAPRQVDPLSQGYDIMLTVPREPLPDSGLVAQ
RVFDLRRAVVVAPALLDRLGPLNHPNQLIDWPCLGLSSESEWQFRAPGGETLNLPLDFRMRTSNSELRLQAAVAGLGVAR
ITSAFAEELIAAGALREVLAGFRSPPMRVYAVFPGRRLMPAKVKVFMDALHRRIEQSARAGPGPEADDPTPWPPAALL
>Mature_318_residues
MRTTDWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGARLFERSTRRLRLTDAGEALLRDAGPLFQRLRE
VSEDAAATFQSPAGTLRIAMPYEFAARQFAEVVLEVMREHAGLRIEVDVAPRQVDPLSQGYDIMLTVPREPLPDSGLVAQ
RVFDLRRAVVVAPALLDRLGPLNHPNQLIDWPCLGLSSESEWQFRAPGGETLNLPLDFRMRTSNSELRLQAAVAGLGVAR
ITSAFAEELIAAGALREVLAGFRSPPMRVYAVFPGRRLMPAKVKVFMDALHRRIEQSARAGPGPEADDPTPWPPAALL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=294, Percent_Identity=31.9727891156463, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789639, Length=282, Percent_Identity=28.7234042553192, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1787128, Length=308, Percent_Identity=27.5974025974026, Blast_Score=102, Evalue=5e-23,
Organism=Escherichia coli, GI1786401, Length=303, Percent_Identity=27.7227722772277, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=27.1477663230241, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787589, Length=297, Percent_Identity=27.2727272727273, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1789173, Length=241, Percent_Identity=29.8755186721992, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=23.4265734265734, Blast_Score=78, Evalue=8e-16,
Organism=Escherichia coli, GI1788748, Length=155, Percent_Identity=30.3225806451613, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786448, Length=277, Percent_Identity=28.158844765343, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34976; Mature: 34976

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTTDWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGARLFERSTRRLRL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
TDAGEALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAARQFAEVVLEVMREH
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
AGLRIEVDVAPRQVDPLSQGYDIMLTVPREPLPDSGLVAQRVFDLRRAVVVAPALLDRLG
CCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
PLNHPNQLIDWPCLGLSSESEWQFRAPGGETLNLPLDFRMRTSNSELRLQAAVAGLGVAR
CCCCCCHHCCCCCCCCCCCCCEEEECCCCCEEECCEEEEEECCCCCEEEHHHHHHHHHHH
ITSAFAEELIAAGALREVLAGFRSPPMRVYAVFPGRRLMPAKVKVFMDALHRRIEQSARA
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC
GPGPEADDPTPWPPAALL
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRTTDWNDWDTFCTVATLGSFTRAADRLGLPKSSVSTAVSRLEGKLGARLFERSTRRLRL
CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEE
TDAGEALLRDAGPLFQRLREVSEDAAATFQSPAGTLRIAMPYEFAARQFAEVVLEVMREH
CCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHH
AGLRIEVDVAPRQVDPLSQGYDIMLTVPREPLPDSGLVAQRVFDLRRAVVVAPALLDRLG
CCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
PLNHPNQLIDWPCLGLSSESEWQFRAPGGETLNLPLDFRMRTSNSELRLQAAVAGLGVAR
CCCCCCHHCCCCCCCCCCCCCEEEECCCCCEEECCEEEEEECCCCCEEEHHHHHHHHHHH
ITSAFAEELIAAGALREVLAGFRSPPMRVYAVFPGRRLMPAKVKVFMDALHRRIEQSARA
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCC
GPGPEADDPTPWPPAALL
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]