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The map label for this gene is yfdE [H]

Identifier: 17546094

GI number: 17546094

Start: 1464244

End: 1465350

Strand: Reverse

Name: yfdE [H]

Synonym: RSc1375

Alternate gene names: 17546094

Gene position: 1465350-1464244 (Counterclockwise)

Preceding gene: 17546095

Following gene: 17546089

Centisome position: 39.43

GC content: 72.81

Gene sequence:

>1107_bases
ATGACATCCACCGCGCCGGACCCCGCCCCGCACCGGCCGCTGGCCGGCGTGCGCGTGCTCGACCTGACGCGCCTGCTGCC
CGGCCCCGCCGCCACGCGCCATCTGGCCGACCTGGGCGCCGAGGTCATCAAGATCGAAGACCCCGGCCCCGGCGACTACG
CGCGCGACATGCTACGCACGCCCGCCGACCGCGCCGCCGGCCGCCCCAGCCTCTTCTTCCGCGCGCTCAACCGCGGCAAG
GCCGAAACGCGGCTCGACCTGAAACGGCCCGAAGACCGCGAGGCCCTCATCGAACACGCGCGCAGCGCCGACGTCCTGGT
CGAAAGCTTCCGCCCCGGCGTGATGGCGCGCCTGGGCGTCGGCTGGGACACGCTGCGCGCGGCCAATCCGGCGCTGGTGA
TGTGCTCGATCAGCGGCTACGGCCAGGACGGCCCGCTGGCCCAGGCCGCCGGCCACGACATCAACTACGTCGGCTACGCG
GGCATGCTGGACCAGCTCATCGGCGACGACGGCACGCCCATCGTGCCCAACGTGCAGATCGGCGACCTGCTGGGCGGCGC
GCTGACAGCGGTGGTCGGCATCCTGGCCGCGCTGGTCGATGCGCGCGCCACCGGACACGGCCGCCACATCGACGTCTCGA
TGACCGACGCAGTGTTCGCGCACAACCTGATGGCGTTCTTCGCGGTCGGCGCGCACGGCCGGGCCAGCCGCGCCGGCACC
GACCTGCTCAACGGCGGCGTGCCGTGCTATGGCGTCTACCGCACGGCGGACGGCCGCTGCATGGCCGTGGGCGCGCTCGA
GCTGAAGTTCTGGCAGGCCCTGTGCGAGGTGATCGATAAGCCGGAATGGAAAGACAGGCACTGGTCGCTCGGCCAGCCCA
TCGGCGGCGAAGAGGCCCGCGCCATGCGCGACGAACTCGCCGCGCGCTTTCGCACCGCCACGCAGGCCGAATGGGCGGCG
CGCTTTGCCGGCGCGGACTGCTGCGTCACCCCCGTGCTGCGCATGGAAGACGCGATGCGGCACCCGCTGTTCGCCACCCG
CGGCAGCGTACTGCGGGAAGACGGGGAGCCGGTGCAGCTCGCGCTGCCGCTACGCTTCCGGGATTGA

Upstream 100 bases:

>100_bases
AACACCGAGCTGGACCAGCTCGAAGCGCGCTGGCTCGCCCTGCAGGAACAGCTCGAACAGATCGGGTGATGCCGGCGCGC
CCGGCGAAGGAGACCTGTCG

Downstream 100 bases:

>100_bases
CTCGCCGTGGTCCAGCGCGTCGAGCAGGCGCGCGGCCTCATCGAGCTGGTGCTGGCTGAACACACGGATGCCATGCTGGC
GCAGCGCCGCCGCGGTCACG

Product: racemase transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 367

Protein sequence:

>368_residues
MTSTAPDPAPHRPLAGVRVLDLTRLLPGPAATRHLADLGAEVIKIEDPGPGDYARDMLRTPADRAAGRPSLFFRALNRGK
AETRLDLKRPEDREALIEHARSADVLVESFRPGVMARLGVGWDTLRAANPALVMCSISGYGQDGPLAQAAGHDINYVGYA
GMLDQLIGDDGTPIVPNVQIGDLLGGALTAVVGILAALVDARATGHGRHIDVSMTDAVFAHNLMAFFAVGAHGRASRAGT
DLLNGGVPCYGVYRTADGRCMAVGALELKFWQALCEVIDKPEWKDRHWSLGQPIGGEEARAMRDELAARFRTATQAEWAA
RFAGADCCVTPVLRMEDAMRHPLFATRGSVLREDGEPVQLALPLRFRD

Sequences:

>Translated_368_residues
MTSTAPDPAPHRPLAGVRVLDLTRLLPGPAATRHLADLGAEVIKIEDPGPGDYARDMLRTPADRAAGRPSLFFRALNRGK
AETRLDLKRPEDREALIEHARSADVLVESFRPGVMARLGVGWDTLRAANPALVMCSISGYGQDGPLAQAAGHDINYVGYA
GMLDQLIGDDGTPIVPNVQIGDLLGGALTAVVGILAALVDARATGHGRHIDVSMTDAVFAHNLMAFFAVGAHGRASRAGT
DLLNGGVPCYGVYRTADGRCMAVGALELKFWQALCEVIDKPEWKDRHWSLGQPIGGEEARAMRDELAARFRTATQAEWAA
RFAGADCCVTPVLRMEDAMRHPLFATRGSVLREDGEPVQLALPLRFRD
>Mature_367_residues
TSTAPDPAPHRPLAGVRVLDLTRLLPGPAATRHLADLGAEVIKIEDPGPGDYARDMLRTPADRAAGRPSLFFRALNRGKA
ETRLDLKRPEDREALIEHARSADVLVESFRPGVMARLGVGWDTLRAANPALVMCSISGYGQDGPLAQAAGHDINYVGYAG
MLDQLIGDDGTPIVPNVQIGDLLGGALTAVVGILAALVDARATGHGRHIDVSMTDAVFAHNLMAFFAVGAHGRASRAGTD
LLNGGVPCYGVYRTADGRCMAVGALELKFWQALCEVIDKPEWKDRHWSLGQPIGGEEARAMRDELAARFRTATQAEWAAR
FAGADCCVTPVLRMEDAMRHPLFATRGSVLREDGEPVQLALPLRFRD

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI266456254, Length=345, Percent_Identity=33.9130434782609, Blast_Score=188, Evalue=5e-48,
Organism=Homo sapiens, GI42794625, Length=345, Percent_Identity=33.9130434782609, Blast_Score=188, Evalue=7e-48,
Organism=Homo sapiens, GI300863124, Length=339, Percent_Identity=32.4483775811209, Blast_Score=178, Evalue=9e-45,
Organism=Homo sapiens, GI300863128, Length=355, Percent_Identity=31.5492957746479, Blast_Score=177, Evalue=1e-44,
Organism=Homo sapiens, GI266458393, Length=263, Percent_Identity=35.7414448669202, Blast_Score=156, Evalue=3e-38,
Organism=Homo sapiens, GI266458397, Length=263, Percent_Identity=35.7414448669202, Blast_Score=156, Evalue=4e-38,
Organism=Homo sapiens, GI300863126, Length=353, Percent_Identity=27.1954674220963, Blast_Score=139, Evalue=4e-33,
Organism=Homo sapiens, GI13376042, Length=339, Percent_Identity=29.7935103244838, Blast_Score=138, Evalue=8e-33,
Organism=Homo sapiens, GI42822893, Length=198, Percent_Identity=34.3434343434343, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI266458395, Length=198, Percent_Identity=34.3434343434343, Blast_Score=96, Evalue=4e-20,
Organism=Escherichia coli, GI87082093, Length=346, Percent_Identity=30.3468208092486, Blast_Score=161, Evalue=5e-41,
Organism=Escherichia coli, GI1788717, Length=385, Percent_Identity=29.0909090909091, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1786222, Length=350, Percent_Identity=26, Blast_Score=80, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI32564160, Length=347, Percent_Identity=34.0057636887608, Blast_Score=181, Evalue=4e-46,
Organism=Caenorhabditis elegans, GI115535051, Length=347, Percent_Identity=32.8530259365994, Blast_Score=175, Evalue=4e-44,
Organism=Drosophila melanogaster, GI24585488, Length=337, Percent_Identity=35.0148367952522, Blast_Score=182, Evalue=2e-46,
Organism=Drosophila melanogaster, GI24648431, Length=335, Percent_Identity=33.134328358209, Blast_Score=131, Evalue=6e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39538; Mature: 39406

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSTAPDPAPHRPLAGVRVLDLTRLLPGPAATRHLADLGAEVIKIEDPGPGDYARDMLRT
CCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHCC
PADRAAGRPSLFFRALNRGKAETRLDLKRPEDREALIEHARSADVLVESFRPGVMARLGV
CHHHHCCCHHHHHHHHHCCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
GWDTLRAANPALVMCSISGYGQDGPLAQAAGHDINYVGYAGMLDQLIGDDGTPIVPNVQI
CHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCH
GDLLGGALTAVVGILAALVDARATGHGRHIDVSMTDAVFAHNLMAFFAVGAHGRASRAGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCH
DLLNGGVPCYGVYRTADGRCMAVGALELKFWQALCEVIDKPEWKDRHWSLGQPIGGEEAR
HHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
AMRDELAARFRTATQAEWAARFAGADCCVTPVLRMEDAMRHPLFATRGSVLREDGEPVQL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHCCHHHHCCCCCEEE
ALPLRFRD
EEEEEECC
>Mature Secondary Structure 
TSTAPDPAPHRPLAGVRVLDLTRLLPGPAATRHLADLGAEVIKIEDPGPGDYARDMLRT
CCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCHHHHHHHCC
PADRAAGRPSLFFRALNRGKAETRLDLKRPEDREALIEHARSADVLVESFRPGVMARLGV
CHHHHCCCHHHHHHHHHCCCCHHEECCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
GWDTLRAANPALVMCSISGYGQDGPLAQAAGHDINYVGYAGMLDQLIGDDGTPIVPNVQI
CHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCH
GDLLGGALTAVVGILAALVDARATGHGRHIDVSMTDAVFAHNLMAFFAVGAHGRASRAGT
HHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCH
DLLNGGVPCYGVYRTADGRCMAVGALELKFWQALCEVIDKPEWKDRHWSLGQPIGGEEAR
HHHCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
AMRDELAARFRTATQAEWAARFAGADCCVTPVLRMEDAMRHPLFATRGSVLREDGEPVQL
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHCCHHHHCCCCCEEE
ALPLRFRD
EEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]