| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is arnT [H]
Identifier: 17546043
GI number: 17546043
Start: 1408817
End: 1410487
Strand: Reverse
Name: arnT [H]
Synonym: RSc1324
Alternate gene names: 17546043
Gene position: 1410487-1408817 (Counterclockwise)
Preceding gene: 17546044
Following gene: 17546042
Centisome position: 37.95
GC content: 70.02
Gene sequence:
>1671_bases ATGCCGATCGACCGCTCCGACACCGCGCCGGCCCTGCCCTGGCGCACCTCCACCCTGTGGCTGCTGGCGGCCGCGCTGCT GGCCGTCTGGCTCGGCACGCTGGGCTACCGCCACCTGATCCCCACCGACGAAGGCCGCTACGCCGAGATCGCCCGCGAGA TGTTCACCTCGGGCGACTGGGTGACGATCCGCTACAACGACCTGAAATACTTCGAAAAGCCGCCGCTGCAGATGTGGGGC ACCGCCCTCGCCTACACGCTGTTCGGCGTCGGCGATTGGCAGGCGCGCCTGTTCACGGCGCTGTCCGGCGTCATCGGCAT CGCCTTCACGATGCTGGCCGCCGCGCGCTGGTGGGGCAAGCGCGTGGCCGTGATCAGCGCGCTGGTGCTGGCAAGCGCGC CGATGTGGAACGTGGGCGCGCATTTCAATTCGCTCGACATGGGCGTGGCGGGCTGCATGACGATGGCACTGGCGGCACTG CTGCTGGCGCAGCATCCGGACGCCACGCCGGCGCGGGGGCGCGGCTGGATGTGGGCCTGCTGGGCCGCGATGGCCCTGGC GGTGCTGAGCAAGGGCCTGATCGGCGTGGTGCTGCCGGGCTTCGTGCTGGTGGTCTACACGCTCGTCGCGCGCGACTGGG CGCTGTGGAAGCGCCTGCACCTGGTGACCGGGCTGGTGGTCTTCTTCGCCGTCGGCGCGCCCTGGTTCGTGCTGATCTCG GCGCGCAACCCCGAGTTCGCCTGGTTCTTCTTCGTGCACGAGCATTTCCAGCGCTTCACATCGACCGTGCATCACCGCCA GGCGCCGCTGTGGTATTTCGTGCCGCTGCTGGTGGCCGGCTTCCTGCCGTGGCTGGCACAACTGCCCGGCGCGGCGCGGC TGACGATGGCGCGCGACCGGACCGCCGCCAACGGCTTCCGCCCGACCCTGCTGCTGGGGCTGTGGGCCGTGCTGATCTTT GCGTTCTTCAGCGTGTCCAACTCCAAGCTGCCGGGCTACATCTTCCCGACCGTGCCGGCGCTGGCGGTCCTGGCGGCGCT CGCGCTCGAGCAGACGAGCGAGCGCATGTGGCGCTGGCAGCTCAAGGCCTTCCTGGGCGTGAGCCTCGTCGGCCTAGCCG CCTGTGGCTATCTCGCCACGATGTCGTCGGAGATGTATCCGAACGCAGTCTTCGCGCGGTTCGCGGCGTTCCTGGCCGTG GCCTTCGTGGCCGGCGCAACGCTGACGTGGCTGGCGCTGCGGTGCTCGGCCCGGCGCTTCGAGAGCCTGGCGGCGTTCGC GTGCGGCTGGTTCCTCACTTTCACCGTCGCGCTGCTCGGCCACGAAGCGTTCGGGCGCTCGATGTCGGGTATCGATCTCG TGCCGGCCGTCAAGCCGTGGCTGAAGCCGGGCGTGCCGTTCTATGCGGTGGAGCGTCTGGACCATACAATGCCGTTCTAC CTCGACACGCCGGCTGTCATGGTGCAGGAGCCCGACGAGCTGGCCTTCGGCGTCGAGCACGAGCCGGCCAAGTGGATTCC CACCACCGACGCCTTCGTCGCCCGCTGGCGCGACGGCGGCCAGGCCGTGGCCATGATGAGCCCGGGCACGTACCAGCGCC TCGCCGCGCAGGGCGTGCCGATGACGGCCATCGCCCAGGACGCGCGCCGGGTCATCGTGCGGCGCCAATGA
Upstream 100 bases:
>100_bases GAGACCATGGACCTCCAGGCCGCCTGCCGCACCTACAACATCCTGATGGCCGAAGGCCGCAAAGTGGCCGCCGCGCTGCT GATCGAGCGCGACTGACCGC
Downstream 100 bases:
>100_bases ATGTCCCGCGAGGGCGTGCTGAAAGGGGCACGCAAGCGGATTTGTCGTAACATGCCGCCCGCGGCGCCGGGGGAAACACT GCTGCGGTCGGTAAAATCAC
Product: hypothetical protein
Products: NA
Alternate protein names: 4-amino-4-deoxy-L-arabinose lipid A transferase; Lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Undecaprenyl phosphate-alpha-L-Ara4N transferase [H]
Number of amino acids: Translated: 556; Mature: 555
Protein sequence:
>556_residues MPIDRSDTAPALPWRTSTLWLLAAALLAVWLGTLGYRHLIPTDEGRYAEIAREMFTSGDWVTIRYNDLKYFEKPPLQMWG TALAYTLFGVGDWQARLFTALSGVIGIAFTMLAAARWWGKRVAVISALVLASAPMWNVGAHFNSLDMGVAGCMTMALAAL LLAQHPDATPARGRGWMWACWAAMALAVLSKGLIGVVLPGFVLVVYTLVARDWALWKRLHLVTGLVVFFAVGAPWFVLIS ARNPEFAWFFFVHEHFQRFTSTVHHRQAPLWYFVPLLVAGFLPWLAQLPGAARLTMARDRTAANGFRPTLLLGLWAVLIF AFFSVSNSKLPGYIFPTVPALAVLAALALEQTSERMWRWQLKAFLGVSLVGLAACGYLATMSSEMYPNAVFARFAAFLAV AFVAGATLTWLALRCSARRFESLAAFACGWFLTFTVALLGHEAFGRSMSGIDLVPAVKPWLKPGVPFYAVERLDHTMPFY LDTPAVMVQEPDELAFGVEHEPAKWIPTTDAFVARWRDGGQAVAMMSPGTYQRLAAQGVPMTAIAQDARRVIVRRQ
Sequences:
>Translated_556_residues MPIDRSDTAPALPWRTSTLWLLAAALLAVWLGTLGYRHLIPTDEGRYAEIAREMFTSGDWVTIRYNDLKYFEKPPLQMWG TALAYTLFGVGDWQARLFTALSGVIGIAFTMLAAARWWGKRVAVISALVLASAPMWNVGAHFNSLDMGVAGCMTMALAAL LLAQHPDATPARGRGWMWACWAAMALAVLSKGLIGVVLPGFVLVVYTLVARDWALWKRLHLVTGLVVFFAVGAPWFVLIS ARNPEFAWFFFVHEHFQRFTSTVHHRQAPLWYFVPLLVAGFLPWLAQLPGAARLTMARDRTAANGFRPTLLLGLWAVLIF AFFSVSNSKLPGYIFPTVPALAVLAALALEQTSERMWRWQLKAFLGVSLVGLAACGYLATMSSEMYPNAVFARFAAFLAV AFVAGATLTWLALRCSARRFESLAAFACGWFLTFTVALLGHEAFGRSMSGIDLVPAVKPWLKPGVPFYAVERLDHTMPFY LDTPAVMVQEPDELAFGVEHEPAKWIPTTDAFVARWRDGGQAVAMMSPGTYQRLAAQGVPMTAIAQDARRVIVRRQ >Mature_555_residues PIDRSDTAPALPWRTSTLWLLAAALLAVWLGTLGYRHLIPTDEGRYAEIAREMFTSGDWVTIRYNDLKYFEKPPLQMWGT ALAYTLFGVGDWQARLFTALSGVIGIAFTMLAAARWWGKRVAVISALVLASAPMWNVGAHFNSLDMGVAGCMTMALAALL LAQHPDATPARGRGWMWACWAAMALAVLSKGLIGVVLPGFVLVVYTLVARDWALWKRLHLVTGLVVFFAVGAPWFVLISA RNPEFAWFFFVHEHFQRFTSTVHHRQAPLWYFVPLLVAGFLPWLAQLPGAARLTMARDRTAANGFRPTLLLGLWAVLIFA FFSVSNSKLPGYIFPTVPALAVLAALALEQTSERMWRWQLKAFLGVSLVGLAACGYLATMSSEMYPNAVFARFAAFLAVA FVAGATLTWLALRCSARRFESLAAFACGWFLTFTVALLGHEAFGRSMSGIDLVPAVKPWLKPGVPFYAVERLDHTMPFYL DTPAVMVQEPDELAFGVEHEPAKWIPTTDAFVARWRDGGQAVAMMSPGTYQRLAAQGVPMTAIAQDARRVIVRRQ
Specific function: Catalyzes the transfer of the L-Ara4N moiety of the glycolipid undecaprenyl phosphate-alpha-L-Ara4N to lipid A. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides [H]
COG id: COG1807
COG function: function code M; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyltransferase 83 family [H]
Homologues:
Organism=Escherichia coli, GI1788591, Length=328, Percent_Identity=31.7073170731707, Blast_Score=135, Evalue=5e-33,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022839 - InterPro: IPR003342 [H]
Pfam domain/function: PF02366 PMT [H]
EC number: =2.4.2.43 [H]
Molecular weight: Translated: 61485; Mature: 61354
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIDRSDTAPALPWRTSTLWLLAAALLAVWLGTLGYRHLIPTDEGRYAEIAREMFTSGDW CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE VTIRYNDLKYFEKPPLQMWGTALAYTLFGVGDWQARLFTALSGVIGIAFTMLAAARWWGK EEEEECCCHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVAVISALVLASAPMWNVGAHFNSLDMGVAGCMTMALAALLLAQHPDATPARGRGWMWAC HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH WAAMALAVLSKGLIGVVLPGFVLVVYTLVARDWALWKRLHLVTGLVVFFAVGAPWFVLIS HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE ARNPEFAWFFFVHEHFQRFTSTVHHRQAPLWYFVPLLVAGFLPWLAQLPGAARLTMARDR CCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHCC TAANGFRPTLLLGLWAVLIFAFFSVSNSKLPGYIFPTVPALAVLAALALEQTSERMWRWQ HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHH LKAFLGVSLVGLAACGYLATMSSEMYPNAVFARFAAFLAVAFVAGATLTWLALRCSARRF HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ESLAAFACGWFLTFTVALLGHEAFGRSMSGIDLVPAVKPWLKPGVPFYAVERLDHTMPFY HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCEE LDTPAVMVQEPDELAFGVEHEPAKWIPTTDAFVARWRDGGQAVAMMSPGTYQRLAAQGVP ECCCEEEEECCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHCCCC MTAIAQDARRVIVRRQ HHHHHHHHHHHHHCCC >Mature Secondary Structure PIDRSDTAPALPWRTSTLWLLAAALLAVWLGTLGYRHLIPTDEGRYAEIAREMFTSGDW CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCE VTIRYNDLKYFEKPPLQMWGTALAYTLFGVGDWQARLFTALSGVIGIAFTMLAAARWWGK EEEEECCCHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVAVISALVLASAPMWNVGAHFNSLDMGVAGCMTMALAALLLAQHPDATPARGRGWMWAC HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH WAAMALAVLSKGLIGVVLPGFVLVVYTLVARDWALWKRLHLVTGLVVFFAVGAPWFVLIS HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEE ARNPEFAWFFFVHEHFQRFTSTVHHRQAPLWYFVPLLVAGFLPWLAQLPGAARLTMARDR CCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHCC TAANGFRPTLLLGLWAVLIFAFFSVSNSKLPGYIFPTVPALAVLAALALEQTSERMWRWQ HHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHH LKAFLGVSLVGLAACGYLATMSSEMYPNAVFARFAAFLAVAFVAGATLTWLALRCSARRF HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ESLAAFACGWFLTFTVALLGHEAFGRSMSGIDLVPAVKPWLKPGVPFYAVERLDHTMPFY HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCEE LDTPAVMVQEPDELAFGVEHEPAKWIPTTDAFVARWRDGGQAVAMMSPGTYQRLAAQGVP ECCCEEEEECCHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCHHHHHHHCCCC MTAIAQDARRVIVRRQ HHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA