| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yejE [H]
Identifier: 17545894
GI number: 17545894
Start: 1235123
End: 1236247
Strand: Direct
Name: yejE [H]
Synonym: RSc1175
Alternate gene names: 17545894
Gene position: 1235123-1236247 (Clockwise)
Preceding gene: 17545893
Following gene: 17545895
Centisome position: 33.23
GC content: 64.62
Gene sequence:
>1125_bases ATGACCCAGTACTCCCGCGCATCCGTTCATCCCGCCAATACGGCGGCGCCTCACGCCGTGCGCCATTCGCCGTCGCCGCT CAAGCGCGCGTGGCGGCGCTTCAAGCAGCACCGGCTGGGGTATTGGAGCCTGATCCTCTTTGTCGCGCTGTTCGTGCTGA GCCTGCTCAGCGAGGCGATCTCCAATGACCGTCCGCTGGTGGTCAAGTACCACGGCCAATGGTATTTCCCGATCGTCAAG ACGTATCCGGAAACCACCTTCGACGGCGATTTCACGACACCCACGGACTACCTCGATCCGTATATCCGCGACAAGTTCAA CGCGCCGGGCAACTTCGCGCTCTATCCGCCCAATCCCTATTCGTACGAGACGCTCAACTATTTCGCCAAGGAGCCCAATC CGGCGCCGCCGTCGGCCGAGAACTGGCTCGGCACGGACGACCGCGGGCGCGATGTGTTCGCGCGACTGCTCTACGGCTTC CGCGTGTCGGTGCTGTTCGGGCTGGCGCTGACGCTGATCGGCGTGCTGGTCGGCACGCTCACCGGCGCGCTGATGGGCTT CTTCGGCGGGCGCTTCGATCTGGTGTCGCAGCGGCTGATCGAAGTCTGGGGCTCGATGCCGGAGCTCTACCTGCTGATCA TCTTCGCGTCGATCTTCGAGCCGAGCCTGGGGCTGCTGATCGTCCTGCTGTCCCTGTTCGGCTGGATGAGCCTGTCGGCC TACGTGCGCGCCGAGTTCTACCGCAACCGTTCGTTGGACTACGTGAAGTCTGCCCGCGCGATGGGCCTGTCGGACGGGCA GATCATCCGGCGCCACATCCTGCCCAACAGCCTGACGCCGATCATCACCTTCCTGCCGTTCAACATGAGCGCGGCCATCC TGACGCTGACCAGCCTCGACTTCCTCGGCCTGGGCGTGCCGCCGTCGATGCCCAGTCTCGGCGAGCTGCTGGCGCAGGGC AAGGCCAACCTGGATGCGTGGTGGATTTCCCTGTCGACCTTTGTGACGCTGGTGCTGATCCTGGTGCTGCTGACCTTCAT GGGCGACGCCCTGCGCGACGCCTTCGATACACGTCTGTCGTTCGCGCAGCTGCGCGCGCGCCAGAAGCCGGCGGGGGTGA AATGA
Upstream 100 bases:
>100_bases CTTTACGCTGATCGGCCTGGCGACGCGGCTGATTTCCGATGTGTGCTACGTGCTGGTCGATCCGCGCATCCATTTCGGCG CGATCGGGCGGTAAGCGACC
Downstream 100 bases:
>100_bases CCCGCGTCGACCTGCGCTCGGCTAAGCCCGACTACGATGGCCCGCTGCTGCGGCTGGACGACCTGTCCGTGCGCTTCGAG GCCGAGCACAACGAGTGGAT
Product: transmembrane ABC transporter protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 374; Mature: 373
Protein sequence:
>374_residues MTQYSRASVHPANTAAPHAVRHSPSPLKRAWRRFKQHRLGYWSLILFVALFVLSLLSEAISNDRPLVVKYHGQWYFPIVK TYPETTFDGDFTTPTDYLDPYIRDKFNAPGNFALYPPNPYSYETLNYFAKEPNPAPPSAENWLGTDDRGRDVFARLLYGF RVSVLFGLALTLIGVLVGTLTGALMGFFGGRFDLVSQRLIEVWGSMPELYLLIIFASIFEPSLGLLIVLLSLFGWMSLSA YVRAEFYRNRSLDYVKSARAMGLSDGQIIRRHILPNSLTPIITFLPFNMSAAILTLTSLDFLGLGVPPSMPSLGELLAQG KANLDAWWISLSTFVTLVLILVLLTFMGDALRDAFDTRLSFAQLRARQKPAGVK
Sequences:
>Translated_374_residues MTQYSRASVHPANTAAPHAVRHSPSPLKRAWRRFKQHRLGYWSLILFVALFVLSLLSEAISNDRPLVVKYHGQWYFPIVK TYPETTFDGDFTTPTDYLDPYIRDKFNAPGNFALYPPNPYSYETLNYFAKEPNPAPPSAENWLGTDDRGRDVFARLLYGF RVSVLFGLALTLIGVLVGTLTGALMGFFGGRFDLVSQRLIEVWGSMPELYLLIIFASIFEPSLGLLIVLLSLFGWMSLSA YVRAEFYRNRSLDYVKSARAMGLSDGQIIRRHILPNSLTPIITFLPFNMSAAILTLTSLDFLGLGVPPSMPSLGELLAQG KANLDAWWISLSTFVTLVLILVLLTFMGDALRDAFDTRLSFAQLRARQKPAGVK >Mature_373_residues TQYSRASVHPANTAAPHAVRHSPSPLKRAWRRFKQHRLGYWSLILFVALFVLSLLSEAISNDRPLVVKYHGQWYFPIVKT YPETTFDGDFTTPTDYLDPYIRDKFNAPGNFALYPPNPYSYETLNYFAKEPNPAPPSAENWLGTDDRGRDVFARLLYGFR VSVLFGLALTLIGVLVGTLTGALMGFFGGRFDLVSQRLIEVWGSMPELYLLIIFASIFEPSLGLLIVLLSLFGWMSLSAY VRAEFYRNRSLDYVKSARAMGLSDGQIIRRHILPNSLTPIITFLPFNMSAAILTLTSLDFLGLGVPPSMPSLGELLAQGK ANLDAWWISLSTFVTLVLILVLLTFMGDALRDAFDTRLSFAQLRARQKPAGVK
Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4239
COG function: function code R; ABC-type uncharacterized transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788505, Length=333, Percent_Identity=50.7507507507508, Blast_Score=355, Evalue=3e-99, Organism=Escherichia coli, GI1787054, Length=241, Percent_Identity=31.1203319502075, Blast_Score=135, Evalue=3e-33, Organism=Escherichia coli, GI1787760, Length=238, Percent_Identity=35.2941176470588, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1789964, Length=235, Percent_Identity=34.8936170212766, Blast_Score=111, Evalue=1e-25, Organism=Escherichia coli, GI1787498, Length=250, Percent_Identity=31.2, Blast_Score=108, Evalue=8e-25, Organism=Escherichia coli, GI1789889, Length=228, Percent_Identity=25.8771929824561, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787549, Length=252, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=3e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 41961; Mature: 41830
Theoretical pI: Translated: 9.78; Mature: 9.78
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQYSRASVHPANTAAPHAVRHSPSPLKRAWRRFKQHRLGYWSLILFVALFVLSLLSEAI CCCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH SNDRPLVVKYHGQWYFPIVKTYPETTFDGDFTTPTDYLDPYIRDKFNAPGNFALYPPNPY CCCCCEEEEECCEEEECHHHHCCCCCCCCCCCCCHHHHCHHHHHCCCCCCCEEEECCCCC SYETLNYFAKEPNPAPPSAENWLGTDDRGRDVFARLLYGFRVSVLFGLALTLIGVLVGTL CHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGALMGFFGGRFDLVSQRLIEVWGSMPELYLLIIFASIFEPSLGLLIVLLSLFGWMSLSA HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH YVRAEFYRNRSLDYVKSARAMGLSDGQIIRRHILPNSLTPIITFLPFNMSAAILTLTSLD HHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHH FLGLGVPPSMPSLGELLAQGKANLDAWWISLSTFVTLVLILVLLTFMGDALRDAFDTRLS HHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAQLRARQKPAGVK HHHHHHHCCCCCCC >Mature Secondary Structure TQYSRASVHPANTAAPHAVRHSPSPLKRAWRRFKQHRLGYWSLILFVALFVLSLLSEAI CCCCCCCCCCCCCCCCCHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH SNDRPLVVKYHGQWYFPIVKTYPETTFDGDFTTPTDYLDPYIRDKFNAPGNFALYPPNPY CCCCCEEEEECCEEEECHHHHCCCCCCCCCCCCCHHHHCHHHHHCCCCCCCEEEECCCCC SYETLNYFAKEPNPAPPSAENWLGTDDRGRDVFARLLYGFRVSVLFGLALTLIGVLVGTL CHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TGALMGFFGGRFDLVSQRLIEVWGSMPELYLLIIFASIFEPSLGLLIVLLSLFGWMSLSA HHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH YVRAEFYRNRSLDYVKSARAMGLSDGQIIRRHILPNSLTPIITFLPFNMSAAILTLTSLD HHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHH FLGLGVPPSMPSLGELLAQGKANLDAWWISLSTFVTLVLILVLLTFMGDALRDAFDTRLS HHCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FAQLRARQKPAGVK HHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9097040; 9278503 [H]