| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is yeiH [C]
Identifier: 17545830
GI number: 17545830
Start: 1167685
End: 1168785
Strand: Direct
Name: yeiH [C]
Synonym: RSc1111
Alternate gene names: 17545830
Gene position: 1167685-1168785 (Clockwise)
Preceding gene: 17545828
Following gene: 17545832
Centisome position: 31.42
GC content: 72.84
Gene sequence:
>1101_bases ATGACGACAGCGCAAAAGCAGTGGGCGGCCGAGGGCGGACTCCGGTGGGACGGGCGCATGTTGGCCGGCGCAGGCCTCCT GGCGGGCTGCGCCGGCGTGGCGATGATCGCGGGCGCGACGGCATGGGCCGGCCACCTGGGCCTGAGCGCGTTGACGCTCG CCATCCTGCTGGGCATGGCGATCGGCCACGTGCCGGGCCACCAGCGCTGGCTGACCGCGGGCACCATCCAGTTCGCGCGG CACACGCTGCTGCGCGCCGGCGTGGTGCTGTACGGCGCGCGGCTCACGCTCGCGCAGGTACACGATCTCGGCGCGAGCGG CGTGGTGATTCCACTGCTGGTGCTGGCGGCAACCATGCTCTCGGGCGCGTGGGTCGGCACGCGTGTCTTCGGCCTGTCTC GGTCGCAGGCGGTGCTCGTGGCGGCGGGTAGCGCGGTGTGCGGCGCGGCGGCGGTGCTGGCCGTGGCGCCGGCGGTGAAG GCCTCGCCGCGCGAGACGGCGGTCGCGATCGCCAGCGTGGTGCTGTTCGGCACCGCCGGCATCTTCCTCTATCCGTGGCT GTACGCGCTGGCGATGCATGCCGGCGTGGCCGTGGCGCCCGCGCATTTCGGGGTCTACATCGGTTCGACGCTGCACGAGG TGGCGCAGGTGATCGCCGCCGCGCGTCCGCTGGGCGATGACGCGGCCAATGCCGCCGTGGTCAGCAAGATGGTGCGGGTC CTGGCGCTGGCGCCGTTGCTGGTGGTGCTCGCCTGCACGATGCCGGCAGAAGGGCTGGTTTTGGAGGCGGGTTCGGGCGA AGGCGCGCTGCGCAGGGCGACCGGTCACGCGTGGCGTGCGATGCCGTGGTTTGCGGCCGGTCTGTTGGGTGTGGCGCTGC TCAATTCCGGCGGCGCCATCCCCGCCACGTGGCACGCGCCGATCGACGCGATCGATACCGGCATGCTGGCCTGCGCGATG TTCGCCATCGGCACGCAGACGCATGTGCCGATGCTGCTCAAGTCCGGCGTGCGTCCGCTGCTGTGCGCGGGGGTGCTGTG GGTCGGGCTGGTTGCGGGCGGTGCGGCGATCAACGCCGGGGTGCGCTGGCTGGCGGGCTGA
Upstream 100 bases:
>100_bases TTATCCATAAAACAGGTCATTCATAGGAAAATTACCCGTTTCTCATGTTATCACGGTGCGCATATCGTTATGCGAATAAC GAATAAGCAAGGCGAGCGTG
Downstream 100 bases:
>100_bases CGCGGGTGTCGCTCGTCAGGGTCCGCAGGTTGTCGCGCAGGCGTTGCGCTTCGGCGTGCGCGAGGGTGCCGTCGATCTCA CCGTGCAGTGCCTGCCAGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 366; Mature: 365
Protein sequence:
>366_residues MTTAQKQWAAEGGLRWDGRMLAGAGLLAGCAGVAMIAGATAWAGHLGLSALTLAILLGMAIGHVPGHQRWLTAGTIQFAR HTLLRAGVVLYGARLTLAQVHDLGASGVVIPLLVLAATMLSGAWVGTRVFGLSRSQAVLVAAGSAVCGAAAVLAVAPAVK ASPRETAVAIASVVLFGTAGIFLYPWLYALAMHAGVAVAPAHFGVYIGSTLHEVAQVIAAARPLGDDAANAAVVSKMVRV LALAPLLVVLACTMPAEGLVLEAGSGEGALRRATGHAWRAMPWFAAGLLGVALLNSGGAIPATWHAPIDAIDTGMLACAM FAIGTQTHVPMLLKSGVRPLLCAGVLWVGLVAGGAAINAGVRWLAG
Sequences:
>Translated_366_residues MTTAQKQWAAEGGLRWDGRMLAGAGLLAGCAGVAMIAGATAWAGHLGLSALTLAILLGMAIGHVPGHQRWLTAGTIQFAR HTLLRAGVVLYGARLTLAQVHDLGASGVVIPLLVLAATMLSGAWVGTRVFGLSRSQAVLVAAGSAVCGAAAVLAVAPAVK ASPRETAVAIASVVLFGTAGIFLYPWLYALAMHAGVAVAPAHFGVYIGSTLHEVAQVIAAARPLGDDAANAAVVSKMVRV LALAPLLVVLACTMPAEGLVLEAGSGEGALRRATGHAWRAMPWFAAGLLGVALLNSGGAIPATWHAPIDAIDTGMLACAM FAIGTQTHVPMLLKSGVRPLLCAGVLWVGLVAGGAAINAGVRWLAG >Mature_365_residues TTAQKQWAAEGGLRWDGRMLAGAGLLAGCAGVAMIAGATAWAGHLGLSALTLAILLGMAIGHVPGHQRWLTAGTIQFARH TLLRAGVVLYGARLTLAQVHDLGASGVVIPLLVLAATMLSGAWVGTRVFGLSRSQAVLVAAGSAVCGAAAVLAVAPAVKA SPRETAVAIASVVLFGTAGIFLYPWLYALAMHAGVAVAPAHFGVYIGSTLHEVAQVIAAARPLGDDAANAAVVSKMVRVL ALAPLLVVLACTMPAEGLVLEAGSGEGALRRATGHAWRAMPWFAAGLLGVALLNSGGAIPATWHAPIDAIDTGMLACAMF AIGTQTHVPMLLKSGVRPLLCAGVLWVGLVAGGAAINAGVRWLAG
Specific function: Unknown
COG id: COG2855
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential)
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0324 family
Homologues:
Organism=Escherichia coli, GI1788482, Length=344, Percent_Identity=43.8953488372093, Blast_Score=241, Evalue=7e-65,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): Y1111_RALSO (Q8Y0D3)
Other databases:
- EMBL: AL646052 - RefSeq: NP_519232.1 - GeneID: 1219924 - GenomeReviews: AL646052_GR - KEGG: rso:RSc1111 - NMPDR: fig|267608.1.peg.1111 - HOGENOM: HBG669767 - OMA: SSGSAIC - ProtClustDB: CLSK2302497 - BioCyc: RSOL267608:RSC1111-MONOMER - InterPro: IPR004630 - InterPro: IPR018383 - TIGRFAMs: TIGR00698
Pfam domain/function: PF03601 Cons_hypoth698
EC number: NA
Molecular weight: Translated: 36840; Mature: 36709
Theoretical pI: Translated: 9.96; Mature: 9.96
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
HASH(0x13f99d50)-; HASH(0x47b6db68)-; HASH(0x47b6cb54)-; HASH(0xce0b938)-; HASH(0x47b70670)-; HASH(0xce0b9b0)-; HASH(0xb6ea718)-; HASH(0x47caf498)-;
Cys/Met content:
1.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTAQKQWAAEGGLRWDGRMLAGAGLLAGCAGVAMIAGATAWAGHLGLSALTLAILLGMA CCCCHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGHVPGHQRWLTAGTIQFARHTLLRAGVVLYGARLTLAQVHDLGASGVVIPLLVLAATML HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH SGAWVGTRVFGLSRSQAVLVAAGSAVCGAAAVLAVAPAVKASPRETAVAIASVVLFGTAG CCCHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH IFLYPWLYALAMHAGVAVAPAHFGVYIGSTLHEVAQVIAAARPLGDDAANAAVVSKMVRV HHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LALAPLLVVLACTMPAEGLVLEAGSGEGALRRATGHAWRAMPWFAAGLLGVALLNSGGAI HHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC PATWHAPIDAIDTGMLACAMFAIGTQTHVPMLLKSGVRPLLCAGVLWVGLVAGGAAINAG CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCC VRWLAG CHHCCH >Mature Secondary Structure TTAQKQWAAEGGLRWDGRMLAGAGLLAGCAGVAMIAGATAWAGHLGLSALTLAILLGMA CCCHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IGHVPGHQRWLTAGTIQFARHTLLRAGVVLYGARLTLAQVHDLGASGVVIPLLVLAATML HHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH SGAWVGTRVFGLSRSQAVLVAAGSAVCGAAAVLAVAPAVKASPRETAVAIASVVLFGTAG CCCHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH IFLYPWLYALAMHAGVAVAPAHFGVYIGSTLHEVAQVIAAARPLGDDAANAAVVSKMVRV HHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH LALAPLLVVLACTMPAEGLVLEAGSGEGALRRATGHAWRAMPWFAAGLLGVALLNSGGAI HHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCC PATWHAPIDAIDTGMLACAMFAIGTQTHVPMLLKSGVRPLLCAGVLWVGLVAGGAAINAG CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHCC VRWLAG CHHCCH
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11823852