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The map label for this gene is 17545803

Identifier: 17545803

GI number: 17545803

Start: 1142301

End: 1143395

Strand: Reverse

Name: 17545803

Synonym: RSc1084

Alternate gene names: NA

Gene position: 1143395-1142301 (Counterclockwise)

Preceding gene: 17545804

Following gene: 17545797

Centisome position: 30.77

GC content: 70.32

Gene sequence:

>1095_bases
ATGAAACTGCACCCGCTGGCGCTTTCGCTGCTGCTTGCCGCCCCCGCCCTGGCAAGCGCCCAGTCCGTGACGCTGTACGG
TGTCGTCGATACCGGCGTCGAATATGTCAACCGCATCGGCACGACCGGCAACAGCGTCGTGCGCATGCCCAACCTCAGCG
GCACGGTGCCGTCGCGCTGGGGGCTGCGCGGCATGGAAGACCTGGGTGGCGGCACCAGGGCGCTGTTCGCGCTGGAGTCC
GGCTTCGCGACCGACAGCGGCACCGCCAACCAGGGTGGCCGCCTGTTCGGCCGGCAGGCCTGGGTGGGTCTGTCCAACAG
CAGTTGGGGCCAGCTCAGCTTCGGCCGGCAGTACACCATGCTGTTCTGGGCCACCCTCGATACCGACCTGCTCGGGCCGA
ATGCCTACGGCTCCAGCTCGCTCGACAACTACCTGCCCAACGCGCGCGCCGACAACGCCATCGCCTACAAGGGCAAGTTC
GGCGGCCTGACGGTCGGCGCCACGTACAGCTTCGGCCGCGACACCGTCAACGCGGGGCCCAGCCCCTCGGGCACCAACTG
CGCGGGCGAGAACCCCGCTGACAGCCTGGCCTGCCGCGAGTGGTCGGCCATGCTGATGTACGAAACCGGCCGATGGGGCC
TCTCCGCCGCCTACGACTCGCTGCGCGGCGGGCCGGGTGCCTTCGCGGGCCTGACCTCCAGCGCACTCAAGGATGACCGG
CTCGCGCTCGGCGGCTATGCGCTGTTCGACAACGCCCGGATCGGCCTGGGCTGGATCGGCCGCCGCAACGGCGCGCTCGC
CACCCCGCGCAGCGACCTCTTCTACGCCGGCGCCGCCTACGATGTGACCCCGGCGCTGACGCTGGCCGGCGAGGTGTTCC
ATCTCCGGTATCACAACAGCGCCAACAAGGCGTGGCTTGGCGCCGTGCGGGCCAGCTACGCGCTGTCCAAGCGCTCGTCG
GTGTATGCCACCGTGGGCTACATCGACAACGGCGGCAGCCTGGCGCTGTCGGTCAGCAGCGCGGCGACCGGCGCTTCACC
CGCGTCGGGCGGCAGCCAGCTGGGCGCGATGGTCGGGGTCAAGCACGTCTTCTGA

Upstream 100 bases:

>100_bases
GCCCATCGCTCCAGCACCGTACCGGCCCGCACGAGGCCGGACGGCCAGGATCGACGCGCCGCCCAGGCGCACCGCTGAAC
AACCACAAGGAGGAGACCCC

Downstream 100 bases:

>100_bases
CCGCCCCGGCCACCGCGCCGCGGGGCAATGCGGAACCTCGGCAGGATCGGGCGGCGCGCAAGAAAACGGCGCCGCCCGCG
CGAGCGCTACGCCGGCGCCA

Product: porin transmembrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 364; Mature: 364

Protein sequence:

>364_residues
MKLHPLALSLLLAAPALASAQSVTLYGVVDTGVEYVNRIGTTGNSVVRMPNLSGTVPSRWGLRGMEDLGGGTRALFALES
GFATDSGTANQGGRLFGRQAWVGLSNSSWGQLSFGRQYTMLFWATLDTDLLGPNAYGSSSLDNYLPNARADNAIAYKGKF
GGLTVGATYSFGRDTVNAGPSPSGTNCAGENPADSLACREWSAMLMYETGRWGLSAAYDSLRGGPGAFAGLTSSALKDDR
LALGGYALFDNARIGLGWIGRRNGALATPRSDLFYAGAAYDVTPALTLAGEVFHLRYHNSANKAWLGAVRASYALSKRSS
VYATVGYIDNGGSLALSVSSAATGASPASGGSQLGAMVGVKHVF

Sequences:

>Translated_364_residues
MKLHPLALSLLLAAPALASAQSVTLYGVVDTGVEYVNRIGTTGNSVVRMPNLSGTVPSRWGLRGMEDLGGGTRALFALES
GFATDSGTANQGGRLFGRQAWVGLSNSSWGQLSFGRQYTMLFWATLDTDLLGPNAYGSSSLDNYLPNARADNAIAYKGKF
GGLTVGATYSFGRDTVNAGPSPSGTNCAGENPADSLACREWSAMLMYETGRWGLSAAYDSLRGGPGAFAGLTSSALKDDR
LALGGYALFDNARIGLGWIGRRNGALATPRSDLFYAGAAYDVTPALTLAGEVFHLRYHNSANKAWLGAVRASYALSKRSS
VYATVGYIDNGGSLALSVSSAATGASPASGGSQLGAMVGVKHVF
>Mature_364_residues
MKLHPLALSLLLAAPALASAQSVTLYGVVDTGVEYVNRIGTTGNSVVRMPNLSGTVPSRWGLRGMEDLGGGTRALFALES
GFATDSGTANQGGRLFGRQAWVGLSNSSWGQLSFGRQYTMLFWATLDTDLLGPNAYGSSSLDNYLPNARADNAIAYKGKF
GGLTVGATYSFGRDTVNAGPSPSGTNCAGENPADSLACREWSAMLMYETGRWGLSAAYDSLRGGPGAFAGLTSSALKDDR
LALGGYALFDNARIGLGWIGRRNGALATPRSDLFYAGAAYDVTPALTLAGEVFHLRYHNSANKAWLGAVRASYALSKRSS
VYATVGYIDNGGSLALSVSSAATGASPASGGSQLGAMVGVKHVF

Specific function: Forms anion selective channels [H]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To bacterial outer membrane proteins and porins [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001702
- InterPro:   IPR002299 [H]

Pfam domain/function: PF00267 Porin_1 [H]

EC number: NA

Molecular weight: Translated: 37776; Mature: 37776

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLHPLALSLLLAAPALASAQSVTLYGVVDTGVEYVNRIGTTGNSVVRMPNLSGTVPSRW
CCCCHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC
GLRGMEDLGGGTRALFALESGFATDSGTANQGGRLFGRQAWVGLSNSSWGQLSFGRQYTM
CCCCHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCCCCCEECCCEEEE
LFWATLDTDLLGPNAYGSSSLDNYLPNARADNAIAYKGKFGGLTVGATYSFGRDTVNAGP
EEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCC
SPSGTNCAGENPADSLACREWSAMLMYETGRWGLSAAYDSLRGGPGAFAGLTSSALKDDR
CCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCC
LALGGYALFDNARIGLGWIGRRNGALATPRSDLFYAGAAYDVTPALTLAGEVFHLRYHNS
EEECCEEEECCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHEECCEEEEEEEECC
ANKAWLGAVRASYALSKRSSVYATVGYIDNGGSLALSVSSAATGASPASGGSQLGAMVGV
CCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
KHVF
HHCC
>Mature Secondary Structure
MKLHPLALSLLLAAPALASAQSVTLYGVVDTGVEYVNRIGTTGNSVVRMPNLSGTVPSRW
CCCCHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCC
GLRGMEDLGGGTRALFALESGFATDSGTANQGGRLFGRQAWVGLSNSSWGQLSFGRQYTM
CCCCHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEECCEEEEECCCCCCCCEECCCEEEE
LFWATLDTDLLGPNAYGSSSLDNYLPNARADNAIAYKGKFGGLTVGATYSFGRDTVNAGP
EEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCCC
SPSGTNCAGENPADSLACREWSAMLMYETGRWGLSAAYDSLRGGPGAFAGLTSSALKDDR
CCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHCCCCC
LALGGYALFDNARIGLGWIGRRNGALATPRSDLFYAGAAYDVTPALTLAGEVFHLRYHNS
EEECCEEEECCCEEEEEEEECCCCCCCCCCCCEEEECCCCCCCHHHEECCEEEEEEEECC
ANKAWLGAVRASYALSKRSSVYATVGYIDNGGSLALSVSSAATGASPASGGSQLGAMVGV
CCCHHHHHHHHHHHHHCCCCEEEEEEEEECCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
KHVF
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658537; 12910271 [H]