| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17545512
Identifier: 17545512
GI number: 17545512
Start: 837210
End: 838712
Strand: Reverse
Name: 17545512
Synonym: RSc0793
Alternate gene names: NA
Gene position: 838712-837210 (Counterclockwise)
Preceding gene: 17545513
Following gene: 17545511
Centisome position: 22.57
GC content: 67.53
Gene sequence:
>1503_bases ATGGACCTCCTTGCCAATCTCGCGCTGGGCTTTTCCACCGCGCTGTCGCTCCAGAACCTGGTCTACGCCTTCATCGGCTG CGTGCTCGGCACGCTGATCGGCGTGCTGCCGGGGCTCGGCCCCATCGCCACCATCGCCATGCTGCTGCCGGTCACCTATA CGCTGCCGCCCGCGGCCGCGCTGATCATGCTGGCGGGCATCTACTACGGCGCGCAGTACGGCGGCTCCACCACGGCCATC CTGGTCAACCTGCCGGGCGAATCGTCCTCGGTGGTGACCACCATCGACGGCTACCAGATGGCGCGGCGCGGGCGCGCGGG CGTGGCGCTGGCCACCGCCGGGCTGGGCTCGTTCTTCGCGGGCTGCGTCGCCACCCTGGTGCTGGCCGCGTTCGCCACGC CGCTGTCGGAATTCGCGTTCCGGTTCGGGCCGGCGGAATACTTCTCGCTGATGGTGCTGGGGCTGATCGGCGCGGTGGTG CTGGCCTCGGGGTCGCTGCTCAAGGCCATCGCCATGATCGTGTTCGGGCTGCTGCTGGGGCTGGTGGGCACCGATGTCAA TTCGGGCGCCGCGCGCTATGCGTTCGACGTGCCGGAGCTGGCCGATGGCCTGAACTTCGTGTCGGTGGCGATGGGCGTGT TCGGCTTTGCGGAAATCATCATCAACCTCGAGCAGAAGGAACACCGCGAAACCTTCGTCGACCACGTGCGCAACCTGTGG CCCAGCCGCGAAGACTTCCGGCGCATGGTCCCCTCCGTGCTGCGCGGCACCGCGCTGGGCTCGCTGCTGGGCATCCTGCC GGGCGGCGGCGCGACGCTGGCCTCGTTCGCGTCGTATTCGCTGGAGAAGAAGGCGTCCAGGTATGCGCATGAATTCGGCA AGGGCGCCATCGAGGGCGTGGCCGGGCCGGAATCGGCCAACAACGCGGCGGCGCAGACCTCGTTCATTCCGCTGCTCACG CTGGGCATTCCGTCCAACGCGGTGATGGCGCTGATGGTCAGCGCCATGACCATGCACGACATCCAGCCCGGCCCGCAGGT GGTGACCAGCAACCCGGCGCTGTTCTGGGGCCTGATCGCCTCGATGTGGATCGGCAACCTGATGCTGATCGTGCTGAACC TGCCGATGATCGGCCTGTGGGTGCGCCTGCTCAAGGTGCCCTACCGCTTCCTGTATCCGGCCATCCTGGTGTTCTGCTGC ATCGGCGTGTATTCGGTGTCGAACACCACGTTCGACGTGTTCCAGACGGCGGTCTTCGGGCTGCTCGGCTACCTGTTCGT CAAGCTGCGCTGCGAGCCGGCGCCCATGCTGCTCGGCTTTGTGCTCGGGCCGCTCATGGAAGAGAACTTCCGCCGCGCCA TGCAGTTCTCGCGCGGCGATTTCTCGATCTTCGTCACGCGGCCGCTGTCGCTGGGGCTGCTGATCGGGGCGGCGGCGCTG GTGCTGCTGGTGGCGATGCCGGCCATCGGCCGCAAGCGCGAGCAGGCGTTCCAGGAGGAATAG
Upstream 100 bases:
>100_bases GCCGTCGTGATGGTGCTGATGAGCCTGGCGGCCTTCGTCTACGGGCTCAAGCTGCAGTTCCCGGTGTGGCCGGCCTTCAT CGGCGGCTGAGGCGCGCGAC
Downstream 100 bases:
>100_bases CGGCGCGCGCCTCGCTGCAACGCACACCACGCAACCGGAGGCGTGCCCTCCGGTTTTCGCTGGTGCGCGCCGCGAAGATC ACCGCCATCGACGCCGGCGC
Product: hypothetical protein
Products: NA
Alternate protein names: ORFZ2 [H]
Number of amino acids: Translated: 500; Mature: 500
Protein sequence:
>500_residues MDLLANLALGFSTALSLQNLVYAFIGCVLGTLIGVLPGLGPIATIAMLLPVTYTLPPAAALIMLAGIYYGAQYGGSTTAI LVNLPGESSSVVTTIDGYQMARRGRAGVALATAGLGSFFAGCVATLVLAAFATPLSEFAFRFGPAEYFSLMVLGLIGAVV LASGSLLKAIAMIVFGLLLGLVGTDVNSGAARYAFDVPELADGLNFVSVAMGVFGFAEIIINLEQKEHRETFVDHVRNLW PSREDFRRMVPSVLRGTALGSLLGILPGGGATLASFASYSLEKKASRYAHEFGKGAIEGVAGPESANNAAAQTSFIPLLT LGIPSNAVMALMVSAMTMHDIQPGPQVVTSNPALFWGLIASMWIGNLMLIVLNLPMIGLWVRLLKVPYRFLYPAILVFCC IGVYSVSNTTFDVFQTAVFGLLGYLFVKLRCEPAPMLLGFVLGPLMEENFRRAMQFSRGDFSIFVTRPLSLGLLIGAAAL VLLVAMPAIGRKREQAFQEE
Sequences:
>Translated_500_residues MDLLANLALGFSTALSLQNLVYAFIGCVLGTLIGVLPGLGPIATIAMLLPVTYTLPPAAALIMLAGIYYGAQYGGSTTAI LVNLPGESSSVVTTIDGYQMARRGRAGVALATAGLGSFFAGCVATLVLAAFATPLSEFAFRFGPAEYFSLMVLGLIGAVV LASGSLLKAIAMIVFGLLLGLVGTDVNSGAARYAFDVPELADGLNFVSVAMGVFGFAEIIINLEQKEHRETFVDHVRNLW PSREDFRRMVPSVLRGTALGSLLGILPGGGATLASFASYSLEKKASRYAHEFGKGAIEGVAGPESANNAAAQTSFIPLLT LGIPSNAVMALMVSAMTMHDIQPGPQVVTSNPALFWGLIASMWIGNLMLIVLNLPMIGLWVRLLKVPYRFLYPAILVFCC IGVYSVSNTTFDVFQTAVFGLLGYLFVKLRCEPAPMLLGFVLGPLMEENFRRAMQFSRGDFSIFVTRPLSLGLLIGAAAL VLLVAMPAIGRKREQAFQEE >Mature_500_residues MDLLANLALGFSTALSLQNLVYAFIGCVLGTLIGVLPGLGPIATIAMLLPVTYTLPPAAALIMLAGIYYGAQYGGSTTAI LVNLPGESSSVVTTIDGYQMARRGRAGVALATAGLGSFFAGCVATLVLAAFATPLSEFAFRFGPAEYFSLMVLGLIGAVV LASGSLLKAIAMIVFGLLLGLVGTDVNSGAARYAFDVPELADGLNFVSVAMGVFGFAEIIINLEQKEHRETFVDHVRNLW PSREDFRRMVPSVLRGTALGSLLGILPGGGATLASFASYSLEKKASRYAHEFGKGAIEGVAGPESANNAAAQTSFIPLLT LGIPSNAVMALMVSAMTMHDIQPGPQVVTSNPALFWGLIASMWIGNLMLIVLNLPMIGLWVRLLKVPYRFLYPAILVFCC IGVYSVSNTTFDVFQTAVFGLLGYLFVKLRCEPAPMLLGFVLGPLMEENFRRAMQFSRGDFSIFVTRPLSLGLLIGAAAL VLLVAMPAIGRKREQAFQEE
Specific function: Unknown
COG id: COG3333
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002823 [H]
Pfam domain/function: PF01970 DUF112 [H]
EC number: NA
Molecular weight: Translated: 53004; Mature: 53004
Theoretical pI: Translated: 7.40; Mature: 7.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLLANLALGFSTALSLQNLVYAFIGCVLGTLIGVLPGLGPIATIAMLLPVTYTLPPAAA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH LIMLAGIYYGAQYGGSTTAILVNLPGESSSVVTTIDGYQMARRGRAGVALATAGLGSFFA HHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECHHHHHHCCCCCEEHHHHHHHHHHH GCVATLVLAAFATPLSEFAFRFGPAEYFSLMVLGLIGAVVLASGSLLKAIAMIVFGLLLG HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LVGTDVNSGAARYAFDVPELADGLNFVSVAMGVFGFAEIIINLEQKEHRETFVDHVRNLW HHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PSREDFRRMVPSVLRGTALGSLLGILPGGGATLASFASYSLEKKASRYAHEFGKGAIEGV CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC AGPESANNAAAQTSFIPLLTLGIPSNAVMALMVSAMTMHDIQPGPQVVTSNPALFWGLIA CCCCCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHH SMWIGNLMLIVLNLPMIGLWVRLLKVPYRFLYPAILVFCCIGVYSVSNTTFDVFQTAVFG HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LLGYLFVKLRCEPAPMLLGFVLGPLMEENFRRAMQFSRGDFSIFVTRPLSLGLLIGAAAL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH VLLVAMPAIGRKREQAFQEE HHHHHHHCCCCHHHHHHCCC >Mature Secondary Structure MDLLANLALGFSTALSLQNLVYAFIGCVLGTLIGVLPGLGPIATIAMLLPVTYTLPPAAA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH LIMLAGIYYGAQYGGSTTAILVNLPGESSSVVTTIDGYQMARRGRAGVALATAGLGSFFA HHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEECHHHHHHCCCCCEEHHHHHHHHHHH GCVATLVLAAFATPLSEFAFRFGPAEYFSLMVLGLIGAVVLASGSLLKAIAMIVFGLLLG HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH LVGTDVNSGAARYAFDVPELADGLNFVSVAMGVFGFAEIIINLEQKEHRETFVDHVRNLW HHCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC PSREDFRRMVPSVLRGTALGSLLGILPGGGATLASFASYSLEKKASRYAHEFGKGAIEGV CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC AGPESANNAAAQTSFIPLLTLGIPSNAVMALMVSAMTMHDIQPGPQVVTSNPALFWGLIA CCCCCCCCHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHCCCCCCCEEECCCHHHHHHHH SMWIGNLMLIVLNLPMIGLWVRLLKVPYRFLYPAILVFCCIGVYSVSNTTFDVFQTAVFG HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH LLGYLFVKLRCEPAPMLLGFVLGPLMEENFRRAMQFSRGDFSIFVTRPLSLGLLIGAAAL HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH VLLVAMPAIGRKREQAFQEE HHHHHHHCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8672817 [H]