| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17545506
Identifier: 17545506
GI number: 17545506
Start: 832302
End: 833654
Strand: Direct
Name: 17545506
Synonym: RSc0787
Alternate gene names: NA
Gene position: 832302-833654 (Clockwise)
Preceding gene: 17545505
Following gene: 17545516
Centisome position: 22.4
GC content: 74.8
Gene sequence:
>1353_bases ATGAGCCATCAACGGATCGAGGGAGGCCGTATGAAATCGATCGTATGGGCGGCTGCCGCCGCGCTGTGCTGGTCCGCGCC GGCCGGGGCCGAGCGCTTCGAGCTGACCGGCGCGCCCGGCGCGCCGTATTACGCCGTCACGCTCGGCGCGGAGGTCTATG CCCATAGCCGCGATGCCGGCCTGGCCGATCTGCGCATCCTCAACGGCGACGGCGAGCCGGTGCCGTTCTCCATCGACAGG CCGCGCGATGCGGCGCCGCAGGCCCGCACGCTGCAAACGGTGCGCTGGTTCGCCGCGCCGGCCGAAGAAGACGGCAAGCC CGGCACGGCCGGCGTCGTGCTCGGCACCGACGGCGTGCTGCGCGCGACGGGGCCGCTGCCGGCACAGGCGTCGGCGCGCG CCTGGCTGCTCGACCTGAGCCCGCTGCGCGACACGGTGACGGCCGTGGTGGTCGGCCTGCCCGCCGCCGAATTCCAGGGC GAGGTGTCGGTGCAGGCCAGCGACGACCTGCAGCACTGGCGCCCGGTCACCCGCGCCACGCTGTTCCACCTGGCCAACCA GGGCAGCACGCTGGTGCAGGACCGCATCGAACTGGCCGGCGTGCATGCCAAATACCTGCGGCTGACATGGCAGGGTAAGC CACCGGTGCCCGATGCCGTGCGCGTGGAACTGGCCAGCGGCATGCCGGCCGCGCCGGCCGACAGCGACATCCAGTGGCGC ACCGGCCTGGCGCCGGTGCAGGTGCCCGCGACCGGCGACTACCTGTTCGATACGGGCGGCGCGTTTCCGGTGGAGCGCGT GAAGGTTCGCCTGCCGCAGACGAATACGGTGGTGCAGGCGACGCTGTCCGCGCGCGCGAATGCCCGGGCGCCGTGGCGGC CGGTGACGTCGGCGCGGCTGTTCCGGCTGGCCGGCGCGGGCGGCCGGGGCGAGCAGGAAAGCCCGCCGATGGTCGTGCCG GCCACGGGCGAGCGCTATTGGCGCCTGCAGGTCGATACCCGCAGCGGCGGCCTGGGCGCGGGGGTGCCGGCGTTGTCGAT CGGCTGGCGGCCGGCCACCGTCACCTACGCGGCGCGCGGCAACGTGCCGTTCGTGCTGGCGGTGGGGGAGGTCGCCGACG GCAGCCCGGTCGCCCGCACGGAACTGCTGGCGGGCGCATCGCCTGTGATCGTGCCGGCGCAATCGGGGACGATGACGGCC TCGCCGCCGGAGGCGCTGCGGCGCGAGCCGCCGGGCGGTGCGACGCGCCGGTGGATCCTGTGGGGCGCGTTGGTGGCCGC GGTGGCCGTGCTGGGCGGCATGGCCTGGCGGCTGTTCCGCGTATCGGGCACCCCGGCCGACACGCCGCACTAG
Upstream 100 bases:
>100_bases TCGAGCGCATCGTTTCGTTCATCGGCATTGGCGTGCTGCTGCTGCTGATCGGCTATCTGTCGCCGTTGCCGCCGAAGGCC AGGGTGGAGGAGAGGCCGGC
Downstream 100 bases:
>100_bases CCCGCAATGGAAACGGCGCTCGTCACGGCGCCGTTTTCGTTCCGGGGCACGGGTTGCGTCAGTGCACGAAGGCCGGCTGC ACGAACAGCGCGATGGTGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 450; Mature: 449
Protein sequence:
>450_residues MSHQRIEGGRMKSIVWAAAAALCWSAPAGAERFELTGAPGAPYYAVTLGAEVYAHSRDAGLADLRILNGDGEPVPFSIDR PRDAAPQARTLQTVRWFAAPAEEDGKPGTAGVVLGTDGVLRATGPLPAQASARAWLLDLSPLRDTVTAVVVGLPAAEFQG EVSVQASDDLQHWRPVTRATLFHLANQGSTLVQDRIELAGVHAKYLRLTWQGKPPVPDAVRVELASGMPAAPADSDIQWR TGLAPVQVPATGDYLFDTGGAFPVERVKVRLPQTNTVVQATLSARANARAPWRPVTSARLFRLAGAGGRGEQESPPMVVP ATGERYWRLQVDTRSGGLGAGVPALSIGWRPATVTYAARGNVPFVLAVGEVADGSPVARTELLAGASPVIVPAQSGTMTA SPPEALRREPPGGATRRWILWGALVAAVAVLGGMAWRLFRVSGTPADTPH
Sequences:
>Translated_450_residues MSHQRIEGGRMKSIVWAAAAALCWSAPAGAERFELTGAPGAPYYAVTLGAEVYAHSRDAGLADLRILNGDGEPVPFSIDR PRDAAPQARTLQTVRWFAAPAEEDGKPGTAGVVLGTDGVLRATGPLPAQASARAWLLDLSPLRDTVTAVVVGLPAAEFQG EVSVQASDDLQHWRPVTRATLFHLANQGSTLVQDRIELAGVHAKYLRLTWQGKPPVPDAVRVELASGMPAAPADSDIQWR TGLAPVQVPATGDYLFDTGGAFPVERVKVRLPQTNTVVQATLSARANARAPWRPVTSARLFRLAGAGGRGEQESPPMVVP ATGERYWRLQVDTRSGGLGAGVPALSIGWRPATVTYAARGNVPFVLAVGEVADGSPVARTELLAGASPVIVPAQSGTMTA SPPEALRREPPGGATRRWILWGALVAAVAVLGGMAWRLFRVSGTPADTPH >Mature_449_residues SHQRIEGGRMKSIVWAAAAALCWSAPAGAERFELTGAPGAPYYAVTLGAEVYAHSRDAGLADLRILNGDGEPVPFSIDRP RDAAPQARTLQTVRWFAAPAEEDGKPGTAGVVLGTDGVLRATGPLPAQASARAWLLDLSPLRDTVTAVVVGLPAAEFQGE VSVQASDDLQHWRPVTRATLFHLANQGSTLVQDRIELAGVHAKYLRLTWQGKPPVPDAVRVELASGMPAAPADSDIQWRT GLAPVQVPATGDYLFDTGGAFPVERVKVRLPQTNTVVQATLSARANARAPWRPVTSARLFRLAGAGGRGEQESPPMVVPA TGERYWRLQVDTRSGGLGAGVPALSIGWRPATVTYAARGNVPFVLAVGEVADGSPVARTELLAGASPVIVPAQSGTMTAS PPEALRREPPGGATRRWILWGALVAAVAVLGGMAWRLFRVSGTPADTPH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 47328; Mature: 47197
Theoretical pI: Translated: 9.63; Mature: 9.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHQRIEGGRMKSIVWAAAAALCWSAPAGAERFELTGAPGAPYYAVTLGAEVYAHSRDAG CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCEEEECCCCCC LADLRILNGDGEPVPFSIDRPRDAAPQARTLQTVRWFAAPAEEDGKPGTAGVVLGTDGVL CEEEEEECCCCCCCCEECCCCCCCCCCHHHHHHHHEEECCCCCCCCCCCEEEEECCCCEE RATGPLPAQASARAWLLDLSPLRDTVTAVVVGLPAAEFQGEVSVQASDDLQHWRPVTRAT EECCCCCCCCCCCEEEEECCHHHHHHEEHEEECCCHHCCCEEEEEECCCHHHHHHHHHHH LFHLANQGSTLVQDRIELAGVHAKYLRLTWQGKPPVPDAVRVELASGMPAAPADSDIQWR HHHHHCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCCHHEEEEECCCCCCCCCCCCCEEE TGLAPVQVPATGDYLFDTGGAFPVERVKVRLPQTNTVVQATLSARANARAPWRPVTSARL CCCCEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEEEHHCCCCCCCCCCCCHHHE FRLAGAGGRGEQESPPMVVPATGERYWRLQVDTRSGGLGAGVPALSIGWRPATVTYAARG EEEECCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCEEEECCCCEEEEEEECC NVPFVLAVGEVADGSPVARTELLAGASPVIVPAQSGTMTASPPEALRREPPGGATRRWIL CCCEEEEECCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH WGALVAAVAVLGGMAWRLFRVSGTPADTPH HHHHHHHHHHHCCCEEEEEEECCCCCCCCC >Mature Secondary Structure SHQRIEGGRMKSIVWAAAAALCWSAPAGAERFELTGAPGAPYYAVTLGAEVYAHSRDAG CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEEECCEEEECCCCCC LADLRILNGDGEPVPFSIDRPRDAAPQARTLQTVRWFAAPAEEDGKPGTAGVVLGTDGVL CEEEEEECCCCCCCCEECCCCCCCCCCHHHHHHHHEEECCCCCCCCCCCEEEEECCCCEE RATGPLPAQASARAWLLDLSPLRDTVTAVVVGLPAAEFQGEVSVQASDDLQHWRPVTRAT EECCCCCCCCCCCEEEEECCHHHHHHEEHEEECCCHHCCCEEEEEECCCHHHHHHHHHHH LFHLANQGSTLVQDRIELAGVHAKYLRLTWQGKPPVPDAVRVELASGMPAAPADSDIQWR HHHHHCCCCHHHHHHHHHHCCEEEEEEEEECCCCCCCHHEEEEECCCCCCCCCCCCCEEE TGLAPVQVPATGDYLFDTGGAFPVERVKVRLPQTNTVVQATLSARANARAPWRPVTSARL CCCCEEEECCCCCEEEECCCCCCCEEEEEECCCCCEEEEEEEHHCCCCCCCCCCCCHHHE FRLAGAGGRGEQESPPMVVPATGERYWRLQVDTRSGGLGAGVPALSIGWRPATVTYAARG EEEECCCCCCCCCCCCEEEECCCCEEEEEEEECCCCCCCCCCCEEEECCCCEEEEEEECC NVPFVLAVGEVADGSPVARTELLAGASPVIVPAQSGTMTASPPEALRREPPGGATRRWIL CCCEEEEECCCCCCCCCHHHHHHCCCCCEEEECCCCCCCCCCHHHHHCCCCCCCCHHHHH WGALVAAVAVLGGMAWRLFRVSGTPADTPH HHHHHHHHHHHCCCEEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA