| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17545314
Identifier: 17545314
GI number: 17545314
Start: 640997
End: 643186
Strand: Direct
Name: 17545314
Synonym: RSc0595
Alternate gene names: NA
Gene position: 640997-643186 (Clockwise)
Preceding gene: 17545313
Following gene: 17545315
Centisome position: 17.25
GC content: 67.31
Gene sequence:
>2190_bases ATGATTCCGTTCCAGCCACGCGCGCTGGTGCTGGCGCTCGCCGCCGCCCTGCCATCCCTGGCCGCCGTTTCCGCATCGGC GCAGGACGCCGCCAACCCCGCTGCCGCAGCGGCGTCCTCCACGTCCACGGCGCAAGCCACCGCCGCCAACGTGCGGGACC TGGGCGAGACGCGCGTCACGGCCAAGCGGCTCGATGCCGCCCGCAACGCGCTGTCGCCGGATACCGGCAGCTCGGTCTAC CGCTTCGATACCGACGACATCGCCCGCCTGCCGCTGGGCGATGCCACGCCGCTGAACCAGGTGCTGCTGCAGGCGCCGGG CGTGGTGCAGGATTCGTTCGGCCAGCTGCACGTGCGCGGCGATCACGCCAACCTGCAGTACCGCATCAACGGCGTCATCA TTCCCGAGCCGATCAGCGGGTTCGGGCAGATGCTCGACACGCGCTTCGCCAACCAGATCAACGTGCTGACCGGCGCGCTG CCGGCGCAGTACGGCTACCGAACCGCCGGCATCGTCGACATCCAGACCAAGGGCACCGCCACCGATGACGCGGGCGAGCC CAAGGCCATCAGCGGCGAGATCGGCAGCGTGCTGGGCAGCAACGCCACGCACGAGGTCAACTTGCAGTTGCAGGGCAGCA AGGACCGCTTCAGCTACTACCTCTCGGGCGTGTTCGCCGAAAACAATCTCGGCATCGAGAACCCCACGGGCAACCGCAAC GCCACGCACGACCACACCACGCAGAACAAGTCGTTCGGCATGCTCTCGTACCTGCTCGACGCGGACAGCCGGGTGAGCTT CATGTTCGGCACCGCCAACAGCCGCTTCGAGATTCCGACCCGTCCGGGCCTGGAGCCGCAGTTCACGCTGGGCGGCGTGA CGCCGCCCGCTTCGCAGGCGCTTAATGCCAATCAGCGCGAGAAGACCGACTTCCAGATCCTGACGTACCAGCAAAAGGTG TCGCCCAAGCTGGACTACCAGGTGTCGGTGTTCCGCCGCGTGAGCCGCATCGATTATTCGCCGGACCCGGTCGGCGACCT GGTCTACAACGGCGTGGCCTCGGACATCTCGCGCCGCAACGAAGCCTATGGCGTGCAGGGCGATGCCAGCTACAAGCTGA ACGACCGCCATACGCTGCGCGCCGGTCTCTTCGCGCAGCGCGAGCGCTTTGCCGTCGACAATGCCTCCACCGTCTTCCCC GCCGACGACACCGGCGCGCAGACCAGCACCACGCCGTTCACCGTGCTCGACAACTCGAGCGGTTCCGGCACCACCCTCGG CGTCTATCTGCAGGACGAATGGAAGCCGACCGACCGGCTCACCATCAACTACGGCGCGCGCTACGACCACGTCAACGCCA TCGTCAGCGAGCAGCAGCTCAGCCCGCGCCTGGGCCTGACCTACGACCTGACCAGCCGCACCCGCCTGCACGCCGGCTAC GCACGCTACTTCACGCCGCCGCCGACCGAGAAGTTCGATATCACCACGGTGCAGAAATTCATCGGCACCACGAATGCGCT GCCGTCGGATGCCAACACGGCCGTGAAGTCCGAGCGCTCGAATTACTTCGACCTCGGCATCTCGCACCAGCTCACGCCGC ACCTGACGCTGGGGCTGGATGCGTATTACCGCGACGTGCGCCACCTGCAGGACGAAGGCCAGTTCGGCAACGCGCTGCTG TTCTCGGCCTTCAACTACGAACGCGGCCGCATCTACGGGCTGGAGGCCAGCGCCAATTACCGCGAGGGCAATTTCGGCGC CTACCTGAACCTGGGCGTGTCGCGCGCGCAGGGCAAGGGCATCGAAACCGGCCAGTTCAACTTCGACGACGCGGAGCTGG CCTACATCAACAGCCACTGGGTCAGCCTCGACCACGACCAGCGCCTGACCGCGTCGGCCGGCGTGTCGTACCAGTACCGG GGCACCACCTGGCTGGCCGATGCGCTGTTCGGCTCGGGCCTGCGCAGCGGTTTTGCCAATACCGACCGCTTGCCGGCGTA CTGGCAACTGAACCTCGGCGCCGCGCGCGATTTCAACCTGCCGCTGGCGGGCAAGCTCAAGACCCGGCTGACGGTGCTCA ACGTGCTCGACCGCAGCTACGCGCTGCGCGACGGCACGGGCATCGGCGTGGGCGCGCCGCAGTTCGCGCCGCGCCGCACC TTCCTGCTGTCGGTCAGCAAGCCGTTCTGA
Upstream 100 bases:
>100_bases CGATCCACCCTTCAGCCTTTGATGCTTCGTTCGTTCGCCGTCATGCCGCGTTGCGCGTGACGGCTGCTTTTCGCATTCGT TCGCATTCAAAGGTCTGTTC
Downstream 100 bases:
>100_bases TGGGACGGGGAGGGCACGCGCATCGCCCGGGCCCTCCCCATGCCGCATCCGGATACACCGCTCACATCGGCGGGGGCGGT CCGTCCTTGTCGACCAGCAC
Product: outer membrane receptor signal peptide protein
Products: NA
Alternate protein names: Nb-Dependent Outer Membrane Receptor Protein; NB Dependent Receptor; NB-Dependent Receptor Plug; Outer Membrane Insertion C-Terminal Signal; NB-Dependent Outer Membrane Receptor; Outer Membrane Receptor For Iron Transport; Outer Membrane Colicin I Receptor; Nb-Dependent Receptor; NB Potential Colicin Receptor; Cna Protein B-Type Domain Protein; Colicin I Receptor; NB-Dependent Siderophore Receptor; Ferrichrome-Iron Receptor
Number of amino acids: Translated: 729; Mature: 729
Protein sequence:
>729_residues MIPFQPRALVLALAAALPSLAAVSASAQDAANPAAAAASSTSTAQATAANVRDLGETRVTAKRLDAARNALSPDTGSSVY RFDTDDIARLPLGDATPLNQVLLQAPGVVQDSFGQLHVRGDHANLQYRINGVIIPEPISGFGQMLDTRFANQINVLTGAL PAQYGYRTAGIVDIQTKGTATDDAGEPKAISGEIGSVLGSNATHEVNLQLQGSKDRFSYYLSGVFAENNLGIENPTGNRN ATHDHTTQNKSFGMLSYLLDADSRVSFMFGTANSRFEIPTRPGLEPQFTLGGVTPPASQALNANQREKTDFQILTYQQKV SPKLDYQVSVFRRVSRIDYSPDPVGDLVYNGVASDISRRNEAYGVQGDASYKLNDRHTLRAGLFAQRERFAVDNASTVFP ADDTGAQTSTTPFTVLDNSSGSGTTLGVYLQDEWKPTDRLTINYGARYDHVNAIVSEQQLSPRLGLTYDLTSRTRLHAGY ARYFTPPPTEKFDITTVQKFIGTTNALPSDANTAVKSERSNYFDLGISHQLTPHLTLGLDAYYRDVRHLQDEGQFGNALL FSAFNYERGRIYGLEASANYREGNFGAYLNLGVSRAQGKGIETGQFNFDDAELAYINSHWVSLDHDQRLTASAGVSYQYR GTTWLADALFGSGLRSGFANTDRLPAYWQLNLGAARDFNLPLAGKLKTRLTVLNVLDRSYALRDGTGIGVGAPQFAPRRT FLLSVSKPF
Sequences:
>Translated_729_residues MIPFQPRALVLALAAALPSLAAVSASAQDAANPAAAAASSTSTAQATAANVRDLGETRVTAKRLDAARNALSPDTGSSVY RFDTDDIARLPLGDATPLNQVLLQAPGVVQDSFGQLHVRGDHANLQYRINGVIIPEPISGFGQMLDTRFANQINVLTGAL PAQYGYRTAGIVDIQTKGTATDDAGEPKAISGEIGSVLGSNATHEVNLQLQGSKDRFSYYLSGVFAENNLGIENPTGNRN ATHDHTTQNKSFGMLSYLLDADSRVSFMFGTANSRFEIPTRPGLEPQFTLGGVTPPASQALNANQREKTDFQILTYQQKV SPKLDYQVSVFRRVSRIDYSPDPVGDLVYNGVASDISRRNEAYGVQGDASYKLNDRHTLRAGLFAQRERFAVDNASTVFP ADDTGAQTSTTPFTVLDNSSGSGTTLGVYLQDEWKPTDRLTINYGARYDHVNAIVSEQQLSPRLGLTYDLTSRTRLHAGY ARYFTPPPTEKFDITTVQKFIGTTNALPSDANTAVKSERSNYFDLGISHQLTPHLTLGLDAYYRDVRHLQDEGQFGNALL FSAFNYERGRIYGLEASANYREGNFGAYLNLGVSRAQGKGIETGQFNFDDAELAYINSHWVSLDHDQRLTASAGVSYQYR GTTWLADALFGSGLRSGFANTDRLPAYWQLNLGAARDFNLPLAGKLKTRLTVLNVLDRSYALRDGTGIGVGAPQFAPRRT FLLSVSKPF >Mature_729_residues MIPFQPRALVLALAAALPSLAAVSASAQDAANPAAAAASSTSTAQATAANVRDLGETRVTAKRLDAARNALSPDTGSSVY RFDTDDIARLPLGDATPLNQVLLQAPGVVQDSFGQLHVRGDHANLQYRINGVIIPEPISGFGQMLDTRFANQINVLTGAL PAQYGYRTAGIVDIQTKGTATDDAGEPKAISGEIGSVLGSNATHEVNLQLQGSKDRFSYYLSGVFAENNLGIENPTGNRN ATHDHTTQNKSFGMLSYLLDADSRVSFMFGTANSRFEIPTRPGLEPQFTLGGVTPPASQALNANQREKTDFQILTYQQKV SPKLDYQVSVFRRVSRIDYSPDPVGDLVYNGVASDISRRNEAYGVQGDASYKLNDRHTLRAGLFAQRERFAVDNASTVFP ADDTGAQTSTTPFTVLDNSSGSGTTLGVYLQDEWKPTDRLTINYGARYDHVNAIVSEQQLSPRLGLTYDLTSRTRLHAGY ARYFTPPPTEKFDITTVQKFIGTTNALPSDANTAVKSERSNYFDLGISHQLTPHLTLGLDAYYRDVRHLQDEGQFGNALL FSAFNYERGRIYGLEASANYREGNFGAYLNLGVSRAQGKGIETGQFNFDDAELAYINSHWVSLDHDQRLTASAGVSYQYR GTTWLADALFGSGLRSGFANTDRLPAYWQLNLGAARDFNLPLAGKLKTRLTVLNVLDRSYALRDGTGIGVGAPQFAPRRT FLLSVSKPF
Specific function: Unknown
COG id: COG1629
COG function: function code P; Outer membrane receptor proteins, mostly Fe transport
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79234; Mature: 79234
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 0.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 0.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPFQPRALVLALAAALPSLAAVSASAQDAANPAAAAASSTSTAQATAANVRDLGETRVT CCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH AKRLDAARNALSPDTGSSVYRFDTDDIARLPLGDATPLNQVLLQAPGVVQDSFGQLHVRG HHHHHHHHHCCCCCCCCCEEEECCCCCEECCCCCCCCHHHHHHHCCCCEECCCCEEEEEE DHANLQYRINGVIIPEPISGFGQMLDTRFANQINVLTGALPAQYGYRTAGIVDIQTKGTA CCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC TDDAGEPKAISGEIGSVLGSNATHEVNLQLQGSKDRFSYYLSGVFAENNLGIENPTGNRN CCCCCCCCEECCHHHHHHCCCCCEEEEEEEECCCHHEEEEEEEEEECCCCCCCCCCCCCC ATHDHTTQNKSFGMLSYLLDADSRVSFMFGTANSRFEIPTRPGLEPQFTLGGVTPPASQA CCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCEEECCCCCCHHHH LNANQREKTDFQILTYQQKVSPKLDYQVSVFRRVSRIDYSPDPVGDLVYNGVASDISRRN CCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC EAYGVQGDASYKLNDRHTLRAGLFAQRERFAVDNASTVFPADDTGAQTSTTPFTVLDNSS HHCCCCCCCCEEECCCHHHHHHHHHHHHHHEECCCCEEECCCCCCCCCCCCCEEEEECCC GSGTTLGVYLQDEWKPTDRLTINYGARYDHVNAIVSEQQLSPRLGLTYDLTSRTRLHAGY CCCCEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEECCH ARYFTPPPTEKFDITTVQKFIGTTNALPSDANTAVKSERSNYFDLGISHQLTPHLTLGLD HCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCEEECHH AYYRDVRHLQDEGQFGNALLFSAFNYERGRIYGLEASANYREGNFGAYLNLGVSRAQGKG HHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC IETGQFNFDDAELAYINSHWVSLDHDQRLTASAGVSYQYRGTTWLADALFGSGLRSGFAN CCCCCCCCCCCEEEEEECEEEEECCCCCEEHHCCCEEEECCCHHHHHHHHHHHHHHCCCC TDRLPAYWQLNLGAARDFNLPLAGKLKTRLTVLNVLDRSYALRDGTGIGVGAPQFAPRRT CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCEE FLLSVSKPF EEEEECCCC >Mature Secondary Structure MIPFQPRALVLALAAALPSLAAVSASAQDAANPAAAAASSTSTAQATAANVRDLGETRVT CCCCCHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH AKRLDAARNALSPDTGSSVYRFDTDDIARLPLGDATPLNQVLLQAPGVVQDSFGQLHVRG HHHHHHHHHCCCCCCCCCEEEECCCCCEECCCCCCCCHHHHHHHCCCCEECCCCEEEEEE DHANLQYRINGVIIPEPISGFGQMLDTRFANQINVLTGALPAQYGYRTAGIVDIQTKGTA CCCCEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCC TDDAGEPKAISGEIGSVLGSNATHEVNLQLQGSKDRFSYYLSGVFAENNLGIENPTGNRN CCCCCCCCEECCHHHHHHCCCCCEEEEEEEECCCHHEEEEEEEEEECCCCCCCCCCCCCC ATHDHTTQNKSFGMLSYLLDADSRVSFMFGTANSRFEIPTRPGLEPQFTLGGVTPPASQA CCCCCCCCCCCCHHHHHHHCCCCCEEEEEECCCCEEECCCCCCCCCCEEECCCCCCHHHH LNANQREKTDFQILTYQQKVSPKLDYQVSVFRRVSRIDYSPDPVGDLVYNGVASDISRRN CCCCCCCCCCEEEEEEHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCC EAYGVQGDASYKLNDRHTLRAGLFAQRERFAVDNASTVFPADDTGAQTSTTPFTVLDNSS HHCCCCCCCCEEECCCHHHHHHHHHHHHHHEECCCCEEECCCCCCCCCCCCCEEEEECCC GSGTTLGVYLQDEWKPTDRLTINYGARYDHVNAIVSEQQLSPRLGLTYDLTSRTRLHAGY CCCCEEEEEEECCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEEECCCCCEEECCH ARYFTPPPTEKFDITTVQKFIGTTNALPSDANTAVKSERSNYFDLGISHQLTPHLTLGLD HCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHCCCCEEEECCCCCCCCCEEECHH AYYRDVRHLQDEGQFGNALLFSAFNYERGRIYGLEASANYREGNFGAYLNLGVSRAQGKG HHHHHHHHHHCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEEECCCCCCCCC IETGQFNFDDAELAYINSHWVSLDHDQRLTASAGVSYQYRGTTWLADALFGSGLRSGFAN CCCCCCCCCCCEEEEEECEEEEECCCCCEEHHCCCEEEECCCHHHHHHHHHHHHHHCCCC TDRLPAYWQLNLGAARDFNLPLAGKLKTRLTVLNVLDRSYALRDGTGIGVGAPQFAPRRT CCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCEE FLLSVSKPF EEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA