| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is mosC [H]
Identifier: 17545304
GI number: 17545304
Start: 629014
End: 630240
Strand: Direct
Name: mosC [H]
Synonym: RSc0585
Alternate gene names: 17545304
Gene position: 629014-630240 (Clockwise)
Preceding gene: 17545299
Following gene: 17545305
Centisome position: 16.93
GC content: 70.42
Gene sequence:
>1227_bases ATGGCGGTTTTGTGGCGCACCGGCGCCGCGCGTGCTTTTCTGCCGTGTATGACCTCTGAACTGATCCGATCCGCCGGTGC CATGCGCACGCAGCGTCTGCCGTTGTCGGCGCGCGCGGCCACCATGGCGCTTTTTTTCGTCAACGGCGCAACGATTGCGA CGTGGGGCGTCCACATTCCCACCGTGAAGGCGCGCTTCGGGCTGTCGGAGGCGTCGCTGTCGCTGGCGATGTTCATGGTG GCGGCCGGCGCCATCGCCGCGATGAAATTCGCCGGCGGCTGGGCGGCGCGGGTGAGCACCCGGCGCGCCAGCGTGCAGGC GGGCGTGGTCTTCGGCCTGATGACCGGGCTGCTGATGCTGATGCCAAGCTATGCGCTGCTGCTGGGGTTGCTGGTGCTGT TCGGCATCGCCAACGCCGGCTTCGATGTGGCGATCAATGCGCAGGCGACCACCGTGGAGGCGCACTCCCACAAGCCGATC ATTTCGTCGCTGCACGGCATGTTCAGCCTGGGCGGCATGGTGGGCGCGGCGGCCGGCGGTGTCCTGCTGGACCTGGGTGT GCCGGCGGCCGTGCACTGCGCGGGCATGGGGCTGATCACCGCGGGCATGGCGCTGTGCGCGGGGCCGTTCATGCTGCCCG ACCACGTCCACGCGCCCGGCGAGCCGGCGCATCCGACCACCGGTCGCACGCTGCTCGTGCTCGGCCTGCTGGCGTTCCTC GGGCTGGTGGGCGAAGGCGCGATGTACGACTGGACCACGGTCTATATGCGCGAAGTGGCGCAATCGCCCGAGGCACAGGC CAGTGCGGGCTATGCGGCGTTCTCGGGCGGGATGGCGCTGGCGCGCTTCGGCGGGGATGCCGCACGCGCGCGCTGGGGCA ATACCAGGGTGCTCGGCGTGAGCGGCGTGCTGGCCACCGGGGGCATCCTGCTCGCCCTGCTGTGGCCCGATCCGGCGGCG GTGCTGGCCGGCTTTGCGCTGATGGGCGTGGGCGCGGCGAACATGGTGCCGATCTTCTTTGTCACCGCATCGCGCATGCC GGGGGTGCCCGCGGCCGAGGGTATCGCCGCGGTGGCGCGCTTCGCTTATGTCGGCATGCTGATCGGCCCGGTGTTCATCG GCATGATCGCGCACCATTCCAACCTGCGCTGGGGCCTGTCGCTGGTGGCGCTGACCATGATGCTGATCGCGGTGGCGGGG CCGCGCGCCATCCGTCCGCCGGGCTGA
Upstream 100 bases:
>100_bases CCTGGCTGATCGAGGCCGGTGCGGCCTCGCGGGCGGCATGTCCGATGCGGCAGCGGGGTGATGGCGGGCCGCAACACATC CGTCGGGGCAGCGCGGTAGC
Downstream 100 bases:
>100_bases ATTCGCGTCATGCGCAGGCCGTTCCTTTGCGTTGACTTTCGCTTGCCGTTGCCATAGCGTACGCGGAGGAGAGGGGGTTC TCCGGCGGATTGGCGCGCGT
Product: transport transmembrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 408; Mature: 407
Protein sequence:
>408_residues MAVLWRTGAARAFLPCMTSELIRSAGAMRTQRLPLSARAATMALFFVNGATIATWGVHIPTVKARFGLSEASLSLAMFMV AAGAIAAMKFAGGWAARVSTRRASVQAGVVFGLMTGLLMLMPSYALLLGLLVLFGIANAGFDVAINAQATTVEAHSHKPI ISSLHGMFSLGGMVGAAAGGVLLDLGVPAAVHCAGMGLITAGMALCAGPFMLPDHVHAPGEPAHPTTGRTLLVLGLLAFL GLVGEGAMYDWTTVYMREVAQSPEAQASAGYAAFSGGMALARFGGDAARARWGNTRVLGVSGVLATGGILLALLWPDPAA VLAGFALMGVGAANMVPIFFVTASRMPGVPAAEGIAAVARFAYVGMLIGPVFIGMIAHHSNLRWGLSLVALTMMLIAVAG PRAIRPPG
Sequences:
>Translated_408_residues MAVLWRTGAARAFLPCMTSELIRSAGAMRTQRLPLSARAATMALFFVNGATIATWGVHIPTVKARFGLSEASLSLAMFMV AAGAIAAMKFAGGWAARVSTRRASVQAGVVFGLMTGLLMLMPSYALLLGLLVLFGIANAGFDVAINAQATTVEAHSHKPI ISSLHGMFSLGGMVGAAAGGVLLDLGVPAAVHCAGMGLITAGMALCAGPFMLPDHVHAPGEPAHPTTGRTLLVLGLLAFL GLVGEGAMYDWTTVYMREVAQSPEAQASAGYAAFSGGMALARFGGDAARARWGNTRVLGVSGVLATGGILLALLWPDPAA VLAGFALMGVGAANMVPIFFVTASRMPGVPAAEGIAAVARFAYVGMLIGPVFIGMIAHHSNLRWGLSLVALTMMLIAVAG PRAIRPPG >Mature_407_residues AVLWRTGAARAFLPCMTSELIRSAGAMRTQRLPLSARAATMALFFVNGATIATWGVHIPTVKARFGLSEASLSLAMFMVA AGAIAAMKFAGGWAARVSTRRASVQAGVVFGLMTGLLMLMPSYALLLGLLVLFGIANAGFDVAINAQATTVEAHSHKPII SSLHGMFSLGGMVGAAAGGVLLDLGVPAAVHCAGMGLITAGMALCAGPFMLPDHVHAPGEPAHPTTGRTLLVLGLLAFLG LVGEGAMYDWTTVYMREVAQSPEAQASAGYAAFSGGMALARFGGDAARARWGNTRVLGVSGVLATGGILLALLWPDPAAV LAGFALMGVGAANMVPIFFVTASRMPGVPAAEGIAAVARFAYVGMLIGPVFIGMIAHHSNLRWGLSLVALTMMLIAVAGP RAIRPPG
Specific function: May be a membrane transport protein that could either transport a precursor for rhizopine biosynthesis into bacteroids or the finished product from the bacteroids [H]
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787068, Length=373, Percent_Identity=27.6139410187668, Blast_Score=91, Evalue=1e-19,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 41720; Mature: 41589
Theoretical pI: Translated: 10.79; Mature: 10.79
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 6.1 %Met (Translated Protein) 6.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 5.9 %Met (Mature Protein) 6.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVLWRTGAARAFLPCMTSELIRSAGAMRTQRLPLSARAATMALFFVNGATIATWGVHIP CEEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHEEEEEEECCCEEEEECEECC TVKARFGLSEASLSLAMFMVAAGAIAAMKFAGGWAARVSTRRASVQAGVVFGLMTGLLML CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MPSYALLLGLLVLFGIANAGFDVAINAQATTVEAHSHKPIISSLHGMFSLGGMVGAAAGG HHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC VLLDLGVPAAVHCAGMGLITAGMALCAGPFMLPDHVHAPGEPAHPTTGRTLLVLGLLAFL EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH GLVGEGAMYDWTTVYMREVAQSPEAQASAGYAAFSGGMALARFGGDAARARWGNTRVLGV HHHCCCCCCHHHHHHHHHHHCCCCCHHHCCCHHHCCCEEEECCCCCHHHHCCCCCEEEEE SGVLATGGILLALLWPDPAAVLAGFALMGVGAANMVPIFFVTASRMPGVPAAEGIAAVAR CCHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHH FAYVGMLIGPVFIGMIAHHSNLRWGLSLVALTMMLIAVAGPRAIRPPG HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure AVLWRTGAARAFLPCMTSELIRSAGAMRTQRLPLSARAATMALFFVNGATIATWGVHIP EEEEECCCCHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHEEEEEEECCCEEEEECEECC TVKARFGLSEASLSLAMFMVAAGAIAAMKFAGGWAARVSTRRASVQAGVVFGLMTGLLML CCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH MPSYALLLGLLVLFGIANAGFDVAINAQATTVEAHSHKPIISSLHGMFSLGGMVGAAAGG HHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCC VLLDLGVPAAVHCAGMGLITAGMALCAGPFMLPDHVHAPGEPAHPTTGRTLLVLGLLAFL EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH GLVGEGAMYDWTTVYMREVAQSPEAQASAGYAAFSGGMALARFGGDAARARWGNTRVLGV HHHCCCCCCHHHHHHHHHHHCCCCCHHHCCCHHHCCCEEEECCCCCHHHHCCCCCEEEEE SGVLATGGILLALLWPDPAAVLAGFALMGVGAANMVPIFFVTASRMPGVPAAEGIAAVAR CCHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHHHHHHHH FAYVGMLIGPVFIGMIAHHSNLRWGLSLVALTMMLIAVAGPRAIRPPG HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8349559; 7551036 [H]