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The map label for this gene is rarD [H]

Identifier: 17545289

GI number: 17545289

Start: 613404

End: 614300

Strand: Direct

Name: rarD [H]

Synonym: RSc0570

Alternate gene names: 17545289

Gene position: 613404-614300 (Clockwise)

Preceding gene: 17545288

Following gene: 17545290

Centisome position: 16.51

GC content: 70.46

Gene sequence:

>897_bases
GTGTCGGCCCATGTCCGCGGCGGCGTCATCTTTGCCTTCCTGGCCTACACGATGTGGGGCCTGTTTCCGCTGTACTTCAA
GCTGCTGAAGGCCGTCACGCCGCTGGAGATCCTGTCGCACCGGGTGATCTGGTCGCTGGCGGTGATGGTGGTGGTGCTGG
CCGTCAAGCGGCACTGGGCGTGGCTGTGGGCGCTGCGCCGCCAGCCGCGCGTGGTGGGGCGGCACCTGGCCTGCACCGGC
ATGCTGGCGCTCAACTGGTGCACCTACATCTGGGCGGTCAATCACGATCACGTGCTCGACGCGAGCCTGGGCTATTTCAT
CAACCCGCTGGTGGTGGTGCTGCTGGCGCTGCTGGTGCTGGGCGAGCGGCTGCGGCCGGGGCAGTGGTTCGCGCTGGCGC
TGGCCGTCGCCGGGGTGGTCTGGCTGACCTGGCAGGCCGGGCACCTGCCGTGGATCGCGCTGGTGCTGGCGACGACCTTC
GGCCTGTACGGCCTGCTGCGCAAGACTTCGCCGCTGGGCGCGCTGGAAGGGCTGGCGCTGGAGACGCTGCTGCTGTTTCC
GCTCGCGCTGGCCTACCTGGGCTGGCTGGCCGCGCAGCAGCAGAACGTTTTCCTGGTCGCGCCGCCGGGCATCCAACTGC
TGCTGGTGCTGGCCGGCCCGCTGACCGCCGTGCCGCTGCTGCTGTTCGGGGCCGGGGCGCGGCGCATTCCGCTGTCGCTG
CTGGGCCTGCTGCAGTACGTCAGCCCGACGCTGCAGCTGCTGCTGGGTGTGTGGCTCTACAACGAGCCGTTCGGCGGGCC
GAAGGTGCTCGGCTACGCGTTGATCTGGTGCGGCCTGGTTGTGTATTCGGCCGAAGGGTGGCTGCGGCTGCGGCGGCGCG
CGCCGGTGGCGGCCTGA

Upstream 100 bases:

>100_bases
CATCGCGGCCACCGCGTTCTATGTGGCGACGCGGCGGATGCTCGGCATGATCTGCGTCGGCATGGGCGTTTATACCGTGC
TGCGCCTCTGGGGATAAAAC

Downstream 100 bases:

>100_bases
CCGGCGCGTGCGCCATCCAGCCGGCTTCGCCGCGATGGACGGGCGCGTCAGGTTTCCGGGCGGAAACGCGCGTTCCGACC
GGTGGCATCGGGTAAAATCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MSAHVRGGVIFAFLAYTMWGLFPLYFKLLKAVTPLEILSHRVIWSLAVMVVVLAVKRHWAWLWALRRQPRVVGRHLACTG
MLALNWCTYIWAVNHDHVLDASLGYFINPLVVVLLALLVLGERLRPGQWFALALAVAGVVWLTWQAGHLPWIALVLATTF
GLYGLLRKTSPLGALEGLALETLLLFPLALAYLGWLAAQQQNVFLVAPPGIQLLLVLAGPLTAVPLLLFGAGARRIPLSL
LGLLQYVSPTLQLLLGVWLYNEPFGGPKVLGYALIWCGLVVYSAEGWLRLRRRAPVAA

Sequences:

>Translated_298_residues
MSAHVRGGVIFAFLAYTMWGLFPLYFKLLKAVTPLEILSHRVIWSLAVMVVVLAVKRHWAWLWALRRQPRVVGRHLACTG
MLALNWCTYIWAVNHDHVLDASLGYFINPLVVVLLALLVLGERLRPGQWFALALAVAGVVWLTWQAGHLPWIALVLATTF
GLYGLLRKTSPLGALEGLALETLLLFPLALAYLGWLAAQQQNVFLVAPPGIQLLLVLAGPLTAVPLLLFGAGARRIPLSL
LGLLQYVSPTLQLLLGVWLYNEPFGGPKVLGYALIWCGLVVYSAEGWLRLRRRAPVAA
>Mature_297_residues
SAHVRGGVIFAFLAYTMWGLFPLYFKLLKAVTPLEILSHRVIWSLAVMVVVLAVKRHWAWLWALRRQPRVVGRHLACTGM
LALNWCTYIWAVNHDHVLDASLGYFINPLVVVLLALLVLGERLRPGQWFALALAVAGVVWLTWQAGHLPWIALVLATTFG
LYGLLRKTSPLGALEGLALETLLLFPLALAYLGWLAAQQQNVFLVAPPGIQLLLVLAGPLTAVPLLLFGAGARRIPLSLL
GLLQYVSPTLQLLLGVWLYNEPFGGPKVLGYALIWCGLVVYSAEGWLRLRRRAPVAA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=294, Percent_Identity=42.8571428571429, Blast_Score=229, Evalue=2e-61,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32900; Mature: 32769

Theoretical pI: Translated: 10.51; Mature: 10.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAHVRGGVIFAFLAYTMWGLFPLYFKLLKAVTPLEILSHRVIWSLAVMVVVLAVKRHWA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLWALRRQPRVVGRHLACTGMLALNWCTYIWAVNHDHVLDASLGYFINPLVVVLLALLVL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
GERLRPGQWFALALAVAGVVWLTWQAGHLPWIALVLATTFGLYGLLRKTSPLGALEGLAL
CCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
ETLLLFPLALAYLGWLAAQQQNVFLVAPPGIQLLLVLAGPLTAVPLLLFGAGARRIPLSL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCHHHHHHHHHHCCCCCHHHHHH
LGLLQYVSPTLQLLLGVWLYNEPFGGPKVLGYALIWCGLVVYSAEGWLRLRRRAPVAA
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC
>Mature Secondary Structure 
SAHVRGGVIFAFLAYTMWGLFPLYFKLLKAVTPLEILSHRVIWSLAVMVVVLAVKRHWA
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
WLWALRRQPRVVGRHLACTGMLALNWCTYIWAVNHDHVLDASLGYFINPLVVVLLALLVL
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHH
GERLRPGQWFALALAVAGVVWLTWQAGHLPWIALVLATTFGLYGLLRKTSPLGALEGLAL
CCCCCCCHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
ETLLLFPLALAYLGWLAAQQQNVFLVAPPGIQLLLVLAGPLTAVPLLLFGAGARRIPLSL
HHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHCHHHHHHHHHHCCCCCHHHHHH
LGLLQYVSPTLQLLLGVWLYNEPFGGPKVLGYALIWCGLVVYSAEGWLRLRRRAPVAA
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA