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The map label for this gene is kdsD [H]

Identifier: 17545132

GI number: 17545132

Start: 439882

End: 440883

Strand: Reverse

Name: kdsD [H]

Synonym: RSc0413

Alternate gene names: 17545132

Gene position: 440883-439882 (Counterclockwise)

Preceding gene: 17545134

Following gene: 17545131

Centisome position: 11.86

GC content: 68.66

Gene sequence:

>1002_bases
TTGTTATACTTCGCCGCCATGATAGCGAATTTCAATCCGGATCGAGCGCTGGCCCTGGCCCAGCAGACCTTCGACATCGA
AGCGCAGGCCGTGCTCGGTCTCAAGTCCCAGGTTTCCGCCGACTTTGCGCGCGCGGTCGAGATGGTGCTGCGCTGCACCG
GCCGCGTGGTCGTTTCGGGCATCGGCAAATCCGGCCATATCGCGCGCAAGGTGGCGGCCACGCTCGCCTCCACCGGCACG
CCGGCGTTCTTCGTCCACCCCGCCGAAGCCAGCCACGGCGACCTCGGCATGGTCACGCGCGACGACGTCTTCATCGGCTT
CTCCAATTCCGGCGAGGTATCGGAGCTGACCGCCATCCTGCCGCTGGTCAAGCGGCTGGGCGCCAGGCTGATCGCCGTGA
CGGGCAATCCGCAATCGTCGCTGGCGCAGCACGCCGACGTCATACTGAACTCGCGCGTCGAGGTCGAGGCCTGCCCGCTC
AACCTGGCGCCGACCGCCAGCACCACCGCGCAAATGGCCCTGGGCGACGCCCTGGCCGTGGCTCTGCTCGATGCGCGCGG
CTTCGGCGCAGACGATTTCGCCCGCTCGCACCCCGGCGGCTCGCTCGGGCGCAAGCTGCTCACGCACGTGCGCGACATCA
TGCGCCAGGGCGACGCCGTGCCGCGCGTGACCGAAGACACGCCGCTGTCGCAGGCGCTGATGGAAATCACCCGCAAGGGC
ATGGCGATGACCGCCGTGGTCGACGCCACGGGCCGCGCCGTAGGGGTCTTCACCGACGGCGACCTGCGCCGCCTGCTGGA
AACCCCGCGTGACTGGCGCACCGTGCCGATGCACGAAGTGATGCACCGCAATCCGCACGCGGTCGGCCCCGACCAGTTGG
CGGTCGAGGCGGTCGAAGTGATGGAAACGCATCGCATCAACCAGCTGCTGGTGGTGGACGCCGCCGGGCAGCTGATGGGC
GCGCTGCACATCCACGACCTGACCCGCGCCAAGGTCATCTGA

Upstream 100 bases:

>100_bases
GACCGGTGCGGCACAGCAAAGCGGTGCGCCCGCACGCCCCGTCCGCTCCCCGCGGGCCAAGCCGCGGCGCGCTCCGGGCG
GCCGTGGCCATGGTCAATCG

Downstream 100 bases:

>100_bases
GTCTGATTCCGCTGCTCCGACACCCCGACGCCCCGCCGATGTCCAGCCCGGCCGATTCCCCCGTCCACAGCAACATCGAG
GCACGCTTCCCGCAGGCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 333

Protein sequence:

>333_residues
MLYFAAMIANFNPDRALALAQQTFDIEAQAVLGLKSQVSADFARAVEMVLRCTGRVVVSGIGKSGHIARKVAATLASTGT
PAFFVHPAEASHGDLGMVTRDDVFIGFSNSGEVSELTAILPLVKRLGARLIAVTGNPQSSLAQHADVILNSRVEVEACPL
NLAPTASTTAQMALGDALAVALLDARGFGADDFARSHPGGSLGRKLLTHVRDIMRQGDAVPRVTEDTPLSQALMEITRKG
MAMTAVVDATGRAVGVFTDGDLRRLLETPRDWRTVPMHEVMHRNPHAVGPDQLAVEAVEVMETHRINQLLVVDAAGQLMG
ALHIHDLTRAKVI

Sequences:

>Translated_333_residues
MLYFAAMIANFNPDRALALAQQTFDIEAQAVLGLKSQVSADFARAVEMVLRCTGRVVVSGIGKSGHIARKVAATLASTGT
PAFFVHPAEASHGDLGMVTRDDVFIGFSNSGEVSELTAILPLVKRLGARLIAVTGNPQSSLAQHADVILNSRVEVEACPL
NLAPTASTTAQMALGDALAVALLDARGFGADDFARSHPGGSLGRKLLTHVRDIMRQGDAVPRVTEDTPLSQALMEITRKG
MAMTAVVDATGRAVGVFTDGDLRRLLETPRDWRTVPMHEVMHRNPHAVGPDQLAVEAVEVMETHRINQLLVVDAAGQLMG
ALHIHDLTRAKVI
>Mature_333_residues
MLYFAAMIANFNPDRALALAQQTFDIEAQAVLGLKSQVSADFARAVEMVLRCTGRVVVSGIGKSGHIARKVAATLASTGT
PAFFVHPAEASHGDLGMVTRDDVFIGFSNSGEVSELTAILPLVKRLGARLIAVTGNPQSSLAQHADVILNSRVEVEACPL
NLAPTASTTAQMALGDALAVALLDARGFGADDFARSHPGGSLGRKLLTHVRDIMRQGDAVPRVTEDTPLSQALMEITRKG
MAMTAVVDATGRAVGVFTDGDLRRLLETPRDWRTVPMHEVMHRNPHAVGPDQLAVEAVEVMETHRINQLLVVDAAGQLMG
ALHIHDLTRAKVI

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=314, Percent_Identity=52.8662420382166, Blast_Score=322, Evalue=2e-89,
Organism=Escherichia coli, GI87082151, Length=313, Percent_Identity=46.6453674121406, Blast_Score=277, Evalue=8e-76,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 35468; Mature: 35468

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYFAAMIANFNPDRALALAQQTFDIEAQAVLGLKSQVSADFARAVEMVLRCTGRVVVSG
CEEEEEEHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
IGKSGHIARKVAATLASTGTPAFFVHPAEASHGDLGMVTRDDVFIGFSNSGEVSELTAIL
CCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHH
PLVKRLGARLIAVTGNPQSSLAQHADVILNSRVEVEACPLNLAPTASTTAQMALGDALAV
HHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
ALLDARGFGADDFARSHPGGSLGRKLLTHVRDIMRQGDAVPRVTEDTPLSQALMEITRKG
HHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
MAMTAVVDATGRAVGVFTDGDLRRLLETPRDWRTVPMHEVMHRNPHAVGPDQLAVEAVEV
CEEEEEEECCCCEEEEEECHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
METHRINQLLVVDAAGQLMGALHIHDLTRAKVI
HHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLYFAAMIANFNPDRALALAQQTFDIEAQAVLGLKSQVSADFARAVEMVLRCTGRVVVSG
CEEEEEEHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
IGKSGHIARKVAATLASTGTPAFFVHPAEASHGDLGMVTRDDVFIGFSNSGEVSELTAIL
CCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCEEEEECCCCCHHHHHHHH
PLVKRLGARLIAVTGNPQSSLAQHADVILNSRVEVEACPLNLAPTASTTAQMALGDALAV
HHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
ALLDARGFGADDFARSHPGGSLGRKLLTHVRDIMRQGDAVPRVTEDTPLSQALMEITRKG
HHHHCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCC
MAMTAVVDATGRAVGVFTDGDLRRLLETPRDWRTVPMHEVMHRNPHAVGPDQLAVEAVEV
CEEEEEEECCCCEEEEEECHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHH
METHRINQLLVVDAAGQLMGALHIHDLTRAKVI
HHHHCCCEEEEEECHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]