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The map label for this gene is ymdB [C]

Identifier: 17545053

GI number: 17545053

Start: 366609

End: 367124

Strand: Reverse

Name: ymdB [C]

Synonym: RSc0334

Alternate gene names: 17545053

Gene position: 367124-366609 (Counterclockwise)

Preceding gene: 17545055

Following gene: 17545052

Centisome position: 9.88

GC content: 70.93

Gene sequence:

>516_bases
ATGCCGATCCCTACCGTCACCCTGCGCGCGCTGCGCGCCGACATCACCACCCTGGCGTGCGACGCCATCGTCAACGCAGC
CAACAGTGCCCTGCTGGGGGGCGGGGGCGTGGACGGCGCCATCCACCGCGCCGCCGGACCGGAGCTGCTCGAGGCCTGCC
GTGCCCTGCACGGCTGCCGCACCGGCCAGGCCAAGATCACACCGGGCTTCCTGCTGCCCGCGCGCTACATCATCCATACG
GTCGGCCCCATCTGGCGCGGCGGCCGGCAGGACGAAGCGGCCCTGCTGGCGGCCTGTTATCGCAACAGCCTCGCGCTTGC
CAAGCAGCATGACGTGCGCACCATCGCCTTTCCGTGCATCAGCACGGGCGTCTACGGCTTTCCGCCGCAGTTGGCCGCGC
CGATCGCCGTGCGCACGGTGCGGGAGCACGGCGCCGACCTGGACGACATCGTGTTCTGCTGCTTCTCCGCGGCCGACCTG
GCGCTCTACGAGACGGCGCTGAACGAGGCGAGATGA

Upstream 100 bases:

>100_bases
TGACCGCCACATCGCCTCCCGCGCGGGTTCAACCGGTTCGCAAGCGGACTATTATCGGACAGAGTCCATGTAACCTGCCG
GTCCGTGACCGGAAAGCGCC

Downstream 100 bases:

>100_bases
CTCCGGCATCTCAATGGACGAAACGCCGCAGCCGATCGGCGGCATCGGCTCGACCGGCCTACAATGGTGCCTTTCCCACC
TTGATTCGCGGAGCGTTGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 170

Protein sequence:

>171_residues
MPIPTVTLRALRADITTLACDAIVNAANSALLGGGGVDGAIHRAAGPELLEACRALHGCRTGQAKITPGFLLPARYIIHT
VGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCISTGVYGFPPQLAAPIAVRTVREHGADLDDIVFCCFSAADL
ALYETALNEAR

Sequences:

>Translated_171_residues
MPIPTVTLRALRADITTLACDAIVNAANSALLGGGGVDGAIHRAAGPELLEACRALHGCRTGQAKITPGFLLPARYIIHT
VGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCISTGVYGFPPQLAAPIAVRTVREHGADLDDIVFCCFSAADL
ALYETALNEAR
>Mature_170_residues
PIPTVTLRALRADITTLACDAIVNAANSALLGGGGVDGAIHRAAGPELLEACRALHGCRTGQAKITPGFLLPARYIIHTV
GPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCISTGVYGFPPQLAAPIAVRTVREHGADLDDIVFCCFSAADLA
LYETALNEAR

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain

Homologues:

Organism=Homo sapiens, GI117968621, Length=172, Percent_Identity=55.2325581395349, Blast_Score=190, Evalue=5e-49,
Organism=Homo sapiens, GI13569840, Length=162, Percent_Identity=54.9382716049383, Blast_Score=174, Evalue=4e-44,
Organism=Homo sapiens, GI207450721, Length=148, Percent_Identity=41.8918918918919, Blast_Score=119, Evalue=2e-27,
Organism=Homo sapiens, GI8923143, Length=148, Percent_Identity=41.8918918918919, Blast_Score=118, Evalue=2e-27,
Organism=Homo sapiens, GI20336746, Length=165, Percent_Identity=29.6969696969697, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI154813199, Length=145, Percent_Identity=35.8620689655172, Blast_Score=86, Evalue=1e-17,
Organism=Homo sapiens, GI226371718, Length=150, Percent_Identity=34, Blast_Score=80, Evalue=8e-16,
Organism=Homo sapiens, GI226371716, Length=150, Percent_Identity=34, Blast_Score=80, Evalue=8e-16,
Organism=Homo sapiens, GI226371714, Length=150, Percent_Identity=34, Blast_Score=80, Evalue=8e-16,
Organism=Homo sapiens, GI226371712, Length=150, Percent_Identity=34, Blast_Score=80, Evalue=8e-16,
Organism=Homo sapiens, GI226371710, Length=150, Percent_Identity=34, Blast_Score=80, Evalue=8e-16,
Organism=Homo sapiens, GI226371706, Length=150, Percent_Identity=34, Blast_Score=80, Evalue=8e-16,
Organism=Homo sapiens, GI93141018, Length=168, Percent_Identity=27.3809523809524, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI93141020, Length=168, Percent_Identity=27.3809523809524, Blast_Score=76, Evalue=1e-14,
Organism=Homo sapiens, GI4758496, Length=168, Percent_Identity=27.3809523809524, Blast_Score=76, Evalue=1e-14,
Organism=Escherichia coli, GI1787283, Length=169, Percent_Identity=51.4792899408284, Blast_Score=159, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17538214, Length=140, Percent_Identity=52.1428571428571, Blast_Score=124, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24586353, Length=158, Percent_Identity=37.3417721518987, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y334_RALSO (Q8Y2K1)

Other databases:

- EMBL:   AL646052
- RefSeq:   NP_518455.1
- ProteinModelPortal:   Q8Y2K1
- SMR:   Q8Y2K1
- GeneID:   1219137
- GenomeReviews:   AL646052_GR
- KEGG:   rso:RSc0334
- NMPDR:   fig|267608.1.peg.334
- HOGENOM:   HBG682503
- OMA:   SAYRESI
- ProtClustDB:   PRK00431
- BioCyc:   RSOL267608:RSC0334-MONOMER
- HAMAP:   MF_01205_B
- InterPro:   IPR002589
- InterPro:   IPR022942
- SMART:   SM00506

Pfam domain/function: PF01661 Macro

EC number: NA

Molecular weight: Translated: 18018; Mature: 17887

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIPTVTLRALRADITTLACDAIVNAANSALLGGGGVDGAIHRAAGPELLEACRALHGCR
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHCCCHHHHHHHHHHHCCC
TGQAKITPGFLLPARYIIHTVGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCI
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHH
STGVYGFPPQLAAPIAVRTVREHGADLDDIVFCCFSAADLALYETALNEAR
HCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PIPTVTLRALRADITTLACDAIVNAANSALLGGGGVDGAIHRAAGPELLEACRALHGCR
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCHHHHHCCCHHHHHHHHHHHCCC
TGQAKITPGFLLPARYIIHTVGPIWRGGRQDEAALLAACYRNSLALAKQHDVRTIAFPCI
CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEHHHH
STGVYGFPPQLAAPIAVRTVREHGADLDDIVFCCFSAADLALYETALNEAR
HCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11823852