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The map label for this gene is yddE [C]

Identifier: 17544972

GI number: 17544972

Start: 284265

End: 285122

Strand: Direct

Name: yddE [C]

Synonym: RSc0253

Alternate gene names: 17544972

Gene position: 284265-285122 (Clockwise)

Preceding gene: 17544971

Following gene: 17544975

Centisome position: 7.65

GC content: 68.41

Gene sequence:

>858_bases
ATGTCGCGCTACCCCTTCCGCCTGCTCAACGTCTTCGCCGAAACCACCTTCGGCGGCAATCAGCTCGCCGTCTTCGAGGA
CGGGCGGGGCCTGGACGATGCGACCATGCAGGCCATCGGGCGCCAGTTCAATCTGTCCGAGATCACCTTCATCTTTCCCG
ACGACGCCGATGGCGCCACTGCGCGCTTCCGCATCTTCACGCCGGATTACGAGATGCCGTTTGCCGGCCATCCGTCGCTG
GGCACGGCGCAGGTGGTGCGCGAGCTGTACGGCCCCGGCAATGATGTGACGCTGCGTTGCCACTCCGGTACGGTGCATCT
GTCAGCGCGGGACGATGGCTGGTCGCTGGTTCCGCCGCGTGCCGGCGCGCTGAGCACGCGCCCGGCCGATCCGGCGATCG
CCGGGATGCTGGGGCTGGAGGCCGATGCCCTGGCCAGTCCGCCGATGTGGGTCGATGTCGGTATCGAGCAGTTGATGGTG
CCGGTCAAGCGCCGGGCCGATGTCGAGCGTGCACGTCCTGACCTGTCGGTCTTCGACGCATGGCCGCGCAGCCGCGATGA
CGGACGCAACGCGTACGTGTTCACCATGCCCGAACCCGGCAGCGCGGAGCCGGTCGTGGCGCGTTTCTTCTTTGAATACG
GCACCGGCATGATCGAAGACCCGGGCACCGGCTCGGCATGCGCCAACCTGGGCGGCTGGCTGCGCGCGACCGGCCATGCG
CTGCCCGTCTCGCTGCGTGTCGAACAGGGCGCGGCGGTGCGCCGGCCCTGTCACCTGACGCTGCGGGTGGATGCCGATGG
CACCATCCACGTCGGCGGCCGCGTGATCGAGATCGGCCGCGGCACGCTGAATCTTTGA

Upstream 100 bases:

>100_bases
ACAGATCTGTCCGCAACTGTCCATGGAGCTCCCTCCGCGCTAGCCCGATCATGGGATATCGCAGTCACCACCACCTCACA
CCACCCGCACGGACCCCACC

Downstream 100 bases:

>100_bases
GTCCGAGGGAGGGGGCCTGCAGCCGGCGCGCTATTCCTGTCGCTGCACGACGGGCGGCAGCCACGAGCCGTCCAGCGCGG
CCTCCTTGGGCCACGCCAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 285; Mature: 284

Protein sequence:

>285_residues
MSRYPFRLLNVFAETTFGGNQLAVFEDGRGLDDATMQAIGRQFNLSEITFIFPDDADGATARFRIFTPDYEMPFAGHPSL
GTAQVVRELYGPGNDVTLRCHSGTVHLSARDDGWSLVPPRAGALSTRPADPAIAGMLGLEADALASPPMWVDVGIEQLMV
PVKRRADVERARPDLSVFDAWPRSRDDGRNAYVFTMPEPGSAEPVVARFFFEYGTGMIEDPGTGSACANLGGWLRATGHA
LPVSLRVEQGAAVRRPCHLTLRVDADGTIHVGGRVIEIGRGTLNL

Sequences:

>Translated_285_residues
MSRYPFRLLNVFAETTFGGNQLAVFEDGRGLDDATMQAIGRQFNLSEITFIFPDDADGATARFRIFTPDYEMPFAGHPSL
GTAQVVRELYGPGNDVTLRCHSGTVHLSARDDGWSLVPPRAGALSTRPADPAIAGMLGLEADALASPPMWVDVGIEQLMV
PVKRRADVERARPDLSVFDAWPRSRDDGRNAYVFTMPEPGSAEPVVARFFFEYGTGMIEDPGTGSACANLGGWLRATGHA
LPVSLRVEQGAAVRRPCHLTLRVDADGTIHVGGRVIEIGRGTLNL
>Mature_284_residues
SRYPFRLLNVFAETTFGGNQLAVFEDGRGLDDATMQAIGRQFNLSEITFIFPDDADGATARFRIFTPDYEMPFAGHPSLG
TAQVVRELYGPGNDVTLRCHSGTVHLSARDDGWSLVPPRAGALSTRPADPAIAGMLGLEADALASPPMWVDVGIEQLMVP
VKRRADVERARPDLSVFDAWPRSRDDGRNAYVFTMPEPGSAEPVVARFFFEYGTGMIEDPGTGSACANLGGWLRATGHAL
PVSLRVEQGAAVRRPCHLTLRVDADGTIHVGGRVIEIGRGTLNL

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=239, Percent_Identity=29.2887029288703, Blast_Score=85, Evalue=6e-18,
Organism=Saccharomyces cerevisiae, GI6321818, Length=301, Percent_Identity=23.5880398671096, Blast_Score=77, Evalue=3e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 30840; Mature: 30709

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRYPFRLLNVFAETTFGGNQLAVFEDGRGLDDATMQAIGRQFNLSEITFIFPDDADGAT
CCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCE
ARFRIFTPDYEMPFAGHPSLGTAQVVRELYGPGNDVTLRCHSGTVHLSARDDGWSLVPPR
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCEECCCC
AGALSTRPADPAIAGMLGLEADALASPPMWVDVGIEQLMVPVKRRADVERARPDLSVFDA
CCCCCCCCCCHHHHHHHCCCHHHHCCCCEEEECCHHHHHHHHHHHCCHHHCCCCCEEEEC
WPRSRDDGRNAYVFTMPEPGSAEPVVARFFFEYGTGMIEDPGTGSACANLGGWLRATGHA
CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCHHHHHCCCCEEECCCE
LPVSLRVEQGAAVRRPCHLTLRVDADGTIHVGGRVIEIGRGTLNL
EEEEEEECCCCCCCCCEEEEEEECCCCEEEECCEEEEECCCCCCC
>Mature Secondary Structure 
SRYPFRLLNVFAETTFGGNQLAVFEDGRGLDDATMQAIGRQFNLSEITFIFPDDADGAT
CCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCCE
ARFRIFTPDYEMPFAGHPSLGTAQVVRELYGPGNDVTLRCHSGTVHLSARDDGWSLVPPR
EEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCEEEEEECCCCCEECCCC
AGALSTRPADPAIAGMLGLEADALASPPMWVDVGIEQLMVPVKRRADVERARPDLSVFDA
CCCCCCCCCCHHHHHHHCCCHHHHCCCCEEEECCHHHHHHHHHHHCCHHHCCCCCEEEEC
WPRSRDDGRNAYVFTMPEPGSAEPVVARFFFEYGTGMIEDPGTGSACANLGGWLRATGHA
CCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCEEECCCCCHHHHHCCCCEEECCCE
LPVSLRVEQGAAVRRPCHLTLRVDADGTIHVGGRVIEIGRGTLNL
EEEEEEECCCCCCCCCEEEEEEECCCCEEEECCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]