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The map label for this gene is 17544949

Identifier: 17544949

GI number: 17544949

Start: 252098

End: 253294

Strand: Reverse

Name: 17544949

Synonym: RSc0230

Alternate gene names: NA

Gene position: 253294-252098 (Counterclockwise)

Preceding gene: 17544950

Following gene: 17544941

Centisome position: 6.82

GC content: 70.59

Gene sequence:

>1197_bases
ATGCCGCGCAGCTACCTCCGCCCCGCGCCGTCCGGCGCGCACGGCCATCACCGCGTCACCAATATCGAGCTGTTCTTCGA
TCTGGTGTTCGTGTTCGCGGTGACGCAGCTGTCGCACCTGCTGATCGGCAATTTCACCCTCGCGGGCGGCGCGCAGACAC
TGCTGCTGATGCTGGCCGTGTGGTGGGTGTGGATCTTCACTTCGTGGGTCACCAACTGGCTGGACCCGGAGCAGCTCGCC
ATCCGCCTCCTGCTGCTGGTGCTGATGACGGCGGGGCTGCTGCTGTCGGCGTCGCTGCCGCAGGCGTTCGGCTCGCGCGG
GCTGGCGTTCGCGCTCGCTTACGTCTTCATGCAGTTCGGCCGCACGCTGTTCTTCCTGTGGGCGGTGCGCGGCGAATCGC
TGGGCATGCGGCGCAACTTCCAGCGCATCGCCACGTGGCTGGGCGTCTCGGCGGTGTTCTGGCTGGCGGGCGGCCTCGCG
GAGGGGCCGGCGCGCTGGGCCGCCTGGATCGCCGCGCTCGGCATCGAATGGCTCGGACCGTCGGCGGGCTTCTACACCCC
CGGCCTGGGCCGCTCGACGGTCGACGACTGGCATGTCGAAGGCGGCCACATGGCCGAGCGCTGCTCGCTGTTCATCATCA
TTGCGCTGGGCGAATCGGTGCTGGTCACCGGCTCGACCTTCGCCGGGCTCGACTGGAGCCCGGCCAGCATCGCCGCGATG
GCGTTGTCGTTCATCGGCAGCCTGGCGATGTGGTGGCTGTACTTCGACACCATCGCCGAGCGCGGCAGCCACACCATCTC
GCACGCGGCCGATCCCGGGCGGCTGGCGCGATTGGCCTACACCTACATCCACGTGCTGCTGGTGGCGGGCATCATCGTCG
GCGCGGCGGCCGATGAATTCGTGCTGGCGCATCCGGTGGGGCATCCGCACCCGGGCACGGCGCTGGCGGTGCTCGGCAGC
GCCGCGCTCTACCTGCTCGGCAACCTGCTCTTCAAGTGCGCGATCTTCGGGCGGGCCCGCGCGGCGCACATGCTGGGGCT
GGCGGCGCTGGGACTGATCGGACTGGTGGCGGCCGCACTGCCGGCGCTGGCGGTCTCCGCGCTGGCGACGCTGGTGCTGT
GCGGCACAGCGGCATGGGAGTGGTACACCCGCGCGTGCGAGGTGCCCACCACCCCCGGCCACGGACACCGCGCCTAG

Upstream 100 bases:

>100_bases
ACCAGCGTGGCCGCGCAGCGCCGCTTCGGCTATACCGGCGGCGCGGTGCTGCTGGGCGCCGGCACGATCACGCTCGGCAT
GCAGTCGGGCTGACCCCGCC

Downstream 100 bases:

>100_bases
CCGGCCAGCAAGCGGATCGCCAGCCCGGCCGCGCCGCACCCCAGGATGACCGGGATCACGCCCACGCGATAGCGAAACAG
CGCCACGCCGGCGGCCAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 398; Mature: 397

Protein sequence:

>398_residues
MPRSYLRPAPSGAHGHHRVTNIELFFDLVFVFAVTQLSHLLIGNFTLAGGAQTLLLMLAVWWVWIFTSWVTNWLDPEQLA
IRLLLLVLMTAGLLLSASLPQAFGSRGLAFALAYVFMQFGRTLFFLWAVRGESLGMRRNFQRIATWLGVSAVFWLAGGLA
EGPARWAAWIAALGIEWLGPSAGFYTPGLGRSTVDDWHVEGGHMAERCSLFIIIALGESVLVTGSTFAGLDWSPASIAAM
ALSFIGSLAMWWLYFDTIAERGSHTISHAADPGRLARLAYTYIHVLLVAGIIVGAAADEFVLAHPVGHPHPGTALAVLGS
AALYLLGNLLFKCAIFGRARAAHMLGLAALGLIGLVAAALPALAVSALATLVLCGTAAWEWYTRACEVPTTPGHGHRA

Sequences:

>Translated_398_residues
MPRSYLRPAPSGAHGHHRVTNIELFFDLVFVFAVTQLSHLLIGNFTLAGGAQTLLLMLAVWWVWIFTSWVTNWLDPEQLA
IRLLLLVLMTAGLLLSASLPQAFGSRGLAFALAYVFMQFGRTLFFLWAVRGESLGMRRNFQRIATWLGVSAVFWLAGGLA
EGPARWAAWIAALGIEWLGPSAGFYTPGLGRSTVDDWHVEGGHMAERCSLFIIIALGESVLVTGSTFAGLDWSPASIAAM
ALSFIGSLAMWWLYFDTIAERGSHTISHAADPGRLARLAYTYIHVLLVAGIIVGAAADEFVLAHPVGHPHPGTALAVLGS
AALYLLGNLLFKCAIFGRARAAHMLGLAALGLIGLVAAALPALAVSALATLVLCGTAAWEWYTRACEVPTTPGHGHRA
>Mature_397_residues
PRSYLRPAPSGAHGHHRVTNIELFFDLVFVFAVTQLSHLLIGNFTLAGGAQTLLLMLAVWWVWIFTSWVTNWLDPEQLAI
RLLLLVLMTAGLLLSASLPQAFGSRGLAFALAYVFMQFGRTLFFLWAVRGESLGMRRNFQRIATWLGVSAVFWLAGGLAE
GPARWAAWIAALGIEWLGPSAGFYTPGLGRSTVDDWHVEGGHMAERCSLFIIIALGESVLVTGSTFAGLDWSPASIAAMA
LSFIGSLAMWWLYFDTIAERGSHTISHAADPGRLARLAYTYIHVLLVAGIIVGAAADEFVLAHPVGHPHPGTALAVLGSA
ALYLLGNLLFKCAIFGRARAAHMLGLAALGLIGLVAAALPALAVSALATLVLCGTAAWEWYTRACEVPTTPGHGHRA

Specific function: Unknown

COG id: COG4292

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010640 [H]

Pfam domain/function: PF06772 LtrA [H]

EC number: NA

Molecular weight: Translated: 42693; Mature: 42562

Theoretical pI: Translated: 8.07; Mature: 8.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRSYLRPAPSGAHGHHRVTNIELFFDLVFVFAVTQLSHLLIGNFTLAGGAQTLLLMLAV
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHH
WWVWIFTSWVTNWLDPEQLAIRLLLLVLMTAGLLLSASLPQAFGSRGLAFALAYVFMQFG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHH
RTLFFLWAVRGESLGMRRNFQRIATWLGVSAVFWLAGGLAEGPARWAAWIAALGIEWLGP
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
SAGFYTPGLGRSTVDDWHVEGGHMAERCSLFIIIALGESVLVTGSTFAGLDWSPASIAAM
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEEEECCEEEEECCCCCCCCCCHHHHHHH
ALSFIGSLAMWWLYFDTIAERGSHTISHAADPGRLARLAYTYIHVLLVAGIIVGAAADEF
HHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VLAHPVGHPHPGTALAVLGSAALYLLGNLLFKCAIFGRARAAHMLGLAALGLIGLVAAAL
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PALAVSALATLVLCGTAAWEWYTRACEVPTTPGHGHRA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
PRSYLRPAPSGAHGHHRVTNIELFFDLVFVFAVTQLSHLLIGNFTLAGGAQTLLLMLAV
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCHHHHHHHHHHH
WWVWIFTSWVTNWLDPEQLAIRLLLLVLMTAGLLLSASLPQAFGSRGLAFALAYVFMQFG
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHH
RTLFFLWAVRGESLGMRRNFQRIATWLGVSAVFWLAGGLAEGPARWAAWIAALGIEWLGP
HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
SAGFYTPGLGRSTVDDWHVEGGHMAERCSLFIIIALGESVLVTGSTFAGLDWSPASIAAM
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHEEEEEEECCEEEEECCCCCCCCCCHHHHHHH
ALSFIGSLAMWWLYFDTIAERGSHTISHAADPGRLARLAYTYIHVLLVAGIIVGAAADEF
HHHHHHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VLAHPVGHPHPGTALAVLGSAALYLLGNLLFKCAIFGRARAAHMLGLAALGLIGLVAAAL
EEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PALAVSALATLVLCGTAAWEWYTRACEVPTTPGHGHRA
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9204561; 11481432 [H]