| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
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The map label for this gene is 17544850
Identifier: 17544850
GI number: 17544850
Start: 152819
End: 154792
Strand: Direct
Name: 17544850
Synonym: RSc0131
Alternate gene names: NA
Gene position: 152819-154792 (Clockwise)
Preceding gene: 17544848
Following gene: 17544852
Centisome position: 4.11
GC content: 70.31
Gene sequence:
>1974_bases ATGTCCATCAACACCACGCGTTTCCAATCCGGCCTCGTCGCGGTCTGCGGCGCTCTGGCCCTGACCGCCTGCGGCGGCGG CGACGACACCGCCGCCGGCGACAACTCCGTCGCCACCGTCCAGGCCATTCCCGCGCCGCCGGCCGATCCGGGCTTCGTCG ATTCGGCACCCGTGGCGACCTCGGTGCCGGCCTTCGTCGACAACATCGCCACCAACCAGCGCGGCGATGCGCGCTATGCG ACGCTGGGCACCAACGCGGGCGTGCGGCTGTTCACGCGCTTCCTGGACCTGTGGCAGCCGCTGACGGAGATCGTCGACGC CGGCGTGTCGGCGCCCGCCAACGGGTCGTTCCCCGCCGTGGTCGCGTCCACCTGGACGGGCCTGCCCAACGACGGCACGG CCGGCGGCACCCAGCTCAATCTGCCGGTGCTCAACGCAAACGTTCAATATGTCGTCAGCGCCACCACCGGCCGCACGCAG GCCCAGGCCGACGCCGCCTACTTCGACGACCGGCGCGGCAAGGGCTACAGCGTGACCGACGGCATGGGGCCGCTGACCAC CACCTGGCGCACGCTGACCCAGCAGACCACCTCTATCACCACCGTGCCGGCCGATGCCACCACCGTGCTGTACAACGACT CCGGCAACAACACCGGCGTCAGCACCGCGAGCGGCAACACCACCTTCGGCAAGGTGGTGGACCTGATCAACACCATGGGC AACAACGCCTCCACCGAGCCGGCCAAGCGCTTCTACAAGTACGCGCGGCCGTACCGCTGGAGCAGCAGCGTGGTCGTCGT GCCGACGCTGGTGCCGGCCGAAAGCTCGAACCCGGCCACCGACGGCGGCTTCATCAGCGGCCACTCCGCCGAAGCCGTGC GCGATGCCATGGCGATGGCCTATCTGGTGCCGGAGCGCTTCCAGCAGATGCTGGCCCGCGGCCTGGAGCTGGGCGAGAAC CGCATCTTCGCGGGCATGCATTCGCCGCTGGACGTGATCGGCGGGCGCATGCTCGGCCTGGCCGCGGTGGCCGCCAACCT CTATGACCCGGCCAACGCCACGCTCAAGGCCACCGCCTACACCCAGGCGCACACCGCCCTGATGGCGCAGACCGGCACCG ATGCCACCACGTTCGCCGCCTTCGCGCAGTCCGGCACCCTCACCACCGACCGCTTCGCCGACTACGCCACCAACCAGGCC AACTTCACGCGGCGCATGACCTTCGGCTTCTCGCAGATCAACAGCACGGCGCTGGCGCCGGTGGTGCCCAAGGGCGCCGA GGTGCTGCTGGAAACGCGCTTCCCGTACCTGAGCGCCGACCAGCGCCGCGTGGTGCTGAAGACCACCGAGCTGGCCTCCG GCTACCCGGTGATGGACGACGCCGAAGGCTGGGGCCGCCTGAACCTGTTCGCGGCCGCCGACGGCTATGGCGCGTTCAAC GGCAGCGTGGTCGTGTCGATGGATGCCTCGCAGGGCGGCTTCAATGCCGCCGACACCTGGCGCAACGCGGTTGCCGGCGC GGGCAAGCTGACGCTGCAGGGCACCGGCACGCTGCGCCTGGCCGGCAGCAACACCTACACGGGCGGCACGCAGGTCGCGG GCGGCGTGCTGGGGGCCGACTCGGCCACCGCGTTCGGCACGGGCGACGTGTACCTGGGCGGCGGCACGCTGGTCGTCAAC GCACCGTCGGCGCTGAATGTCGCCGGCAAGTTCACGCAGCTGCAGGGCACCACGCTGGAGCTCGACATCGGCGCGAACGG CCAGGGCAAACTGAGCGTGGCGGGCCTGACGACGATCGCGGGCGGCACGCTGCACGTCAAGTTCGCGAGCGGCTACTCGC CCAAGGTGGGCGACACGATCACCGTGATCGACGGCGCCGGCAGCAACCGCCAGTTCACCTCGGTCGTGGTCGACGGCTTC AAGGCCACCGCGCTCTACACGTCGACCGGCATCCAGATCCGCCTGGACGCCTGA
Upstream 100 bases:
>100_bases GTGACAACGGTCGTCACCAAGATGTCACGCGCGCGTCACCGACGCTGCCGATACTCCGGTGCTTTGCCCTTCACCTGGGA CCAGTCGGTCCGGTTGCTCC
Downstream 100 bases:
>100_bases GCCCGGCCCGCGCGCCGCTGTCAGCGCAGCGGCAGCAGTACGTCCGTCACGGCCTCGTGCTCGGGCACATCGGGGTAGAA CCGCACGCGCTGGAACAGCA
Product: lipoprotein
Products: NA
Alternate protein names: Serine Protease; Beta Strand Repeat-Containing Protein; Autotransporter; Outer Membrane Autotransporter Barrel; Phosphoesterase PA-Phosphatase ; Phosphoesterase PA-Phosphatase Related Protein; Phosphoesterase; Membrane-Associated Phospholipid Phosphatase; Outer Membrane Autotransporter Barrel Domain Protein; Secreted Protein; Phosphatase Protein; Autotransporter-Associated Beta Strand Repeat Protein; Phosphatase Domain-Containing Protein; Autotransporter Serine Protease; Autotransporter Serine Protease Protein; Autotransporter Beta-Domain-Containing Protein; Outer Membrane Autotransporter; Autotransporter Subtilisin-Like Protease; PAP2 Superfamily Protein; Non-Specific Acid Phosphatase; Serine Protease PspB; Phosphoesterase PA-Phosphatase-Like Protein; PAP2 Family Protein; Extracellular Serine Protease; Outer Membrane Autotransporter Domain-Containing Protein; Lipoprotein
Number of amino acids: Translated: 657; Mature: 656
Protein sequence:
>657_residues MSINTTRFQSGLVAVCGALALTACGGGDDTAAGDNSVATVQAIPAPPADPGFVDSAPVATSVPAFVDNIATNQRGDARYA TLGTNAGVRLFTRFLDLWQPLTEIVDAGVSAPANGSFPAVVASTWTGLPNDGTAGGTQLNLPVLNANVQYVVSATTGRTQ AQADAAYFDDRRGKGYSVTDGMGPLTTTWRTLTQQTTSITTVPADATTVLYNDSGNNTGVSTASGNTTFGKVVDLINTMG NNASTEPAKRFYKYARPYRWSSSVVVVPTLVPAESSNPATDGGFISGHSAEAVRDAMAMAYLVPERFQQMLARGLELGEN RIFAGMHSPLDVIGGRMLGLAAVAANLYDPANATLKATAYTQAHTALMAQTGTDATTFAAFAQSGTLTTDRFADYATNQA NFTRRMTFGFSQINSTALAPVVPKGAEVLLETRFPYLSADQRRVVLKTTELASGYPVMDDAEGWGRLNLFAAADGYGAFN GSVVVSMDASQGGFNAADTWRNAVAGAGKLTLQGTGTLRLAGSNTYTGGTQVAGGVLGADSATAFGTGDVYLGGGTLVVN APSALNVAGKFTQLQGTTLELDIGANGQGKLSVAGLTTIAGGTLHVKFASGYSPKVGDTITVIDGAGSNRQFTSVVVDGF KATALYTSTGIQIRLDA
Sequences:
>Translated_657_residues MSINTTRFQSGLVAVCGALALTACGGGDDTAAGDNSVATVQAIPAPPADPGFVDSAPVATSVPAFVDNIATNQRGDARYA TLGTNAGVRLFTRFLDLWQPLTEIVDAGVSAPANGSFPAVVASTWTGLPNDGTAGGTQLNLPVLNANVQYVVSATTGRTQ AQADAAYFDDRRGKGYSVTDGMGPLTTTWRTLTQQTTSITTVPADATTVLYNDSGNNTGVSTASGNTTFGKVVDLINTMG NNASTEPAKRFYKYARPYRWSSSVVVVPTLVPAESSNPATDGGFISGHSAEAVRDAMAMAYLVPERFQQMLARGLELGEN RIFAGMHSPLDVIGGRMLGLAAVAANLYDPANATLKATAYTQAHTALMAQTGTDATTFAAFAQSGTLTTDRFADYATNQA NFTRRMTFGFSQINSTALAPVVPKGAEVLLETRFPYLSADQRRVVLKTTELASGYPVMDDAEGWGRLNLFAAADGYGAFN GSVVVSMDASQGGFNAADTWRNAVAGAGKLTLQGTGTLRLAGSNTYTGGTQVAGGVLGADSATAFGTGDVYLGGGTLVVN APSALNVAGKFTQLQGTTLELDIGANGQGKLSVAGLTTIAGGTLHVKFASGYSPKVGDTITVIDGAGSNRQFTSVVVDGF KATALYTSTGIQIRLDA >Mature_656_residues SINTTRFQSGLVAVCGALALTACGGGDDTAAGDNSVATVQAIPAPPADPGFVDSAPVATSVPAFVDNIATNQRGDARYAT LGTNAGVRLFTRFLDLWQPLTEIVDAGVSAPANGSFPAVVASTWTGLPNDGTAGGTQLNLPVLNANVQYVVSATTGRTQA QADAAYFDDRRGKGYSVTDGMGPLTTTWRTLTQQTTSITTVPADATTVLYNDSGNNTGVSTASGNTTFGKVVDLINTMGN NASTEPAKRFYKYARPYRWSSSVVVVPTLVPAESSNPATDGGFISGHSAEAVRDAMAMAYLVPERFQQMLARGLELGENR IFAGMHSPLDVIGGRMLGLAAVAANLYDPANATLKATAYTQAHTALMAQTGTDATTFAAFAQSGTLTTDRFADYATNQAN FTRRMTFGFSQINSTALAPVVPKGAEVLLETRFPYLSADQRRVVLKTTELASGYPVMDDAEGWGRLNLFAAADGYGAFNG SVVVSMDASQGGFNAADTWRNAVAGAGKLTLQGTGTLRLAGSNTYTGGTQVAGGVLGADSATAFGTGDVYLGGGTLVVNA PSALNVAGKFTQLQGTTLELDIGANGQGKLSVAGLTTIAGGTLHVKFASGYSPKVGDTITVIDGAGSNRQFTSVVVDGFK ATALYTSTGIQIRLDA
Specific function: Unknown
COG id: COG0671
COG function: function code I; Membrane-associated phospholipid phosphatase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 67639; Mature: 67508
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSINTTRFQSGLVAVCGALALTACGGGDDTAAGDNSVATVQAIPAPPADPGFVDSAPVAT CCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHH SVPAFVDNIATNQRGDARYATLGTNAGVRLFTRFLDLWQPLTEIVDAGVSAPANGSFPAV CCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE VASTWTGLPNDGTAGGTQLNLPVLNANVQYVVSATTGRTQAQADAAYFDDRRGKGYSVTD EEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCHHCCHHHHHCCCCCCEEECC GMGPLTTTWRTLTQQTTSITTVPADATTVLYNDSGNNTGVSTASGNTTFGKVVDLINTMG CCCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHC NNASTEPAKRFYKYARPYRWSSSVVVVPTLVPAESSNPATDGGFISGHSAEAVRDAMAMA CCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCEECCCCHHHHHHHHHHH YLVPERFQQMLARGLELGENRIFAGMHSPLDVIGGRMLGLAAVAANLYDPANATLKATAY HHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEE TQAHTALMAQTGTDATTFAAFAQSGTLTTDRFADYATNQANFTRRMTFGFSQINSTALAP HHHHHEEEEECCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEEECHHHCCCCEECC VVPKGAEVLLETRFPYLSADQRRVVLKTTELASGYPVMDDAEGWGRLNLFAAADGYGAFN CCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCC GSVVVSMDASQGGFNAADTWRNAVAGAGKLTLQGTGTLRLAGSNTYTGGTQVAGGVLGAD CCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCCHHCCCEECCC SATAFGTGDVYLGGGTLVVNAPSALNVAGKFTQLQGTTLELDIGANGQGKLSVAGLTTIA CCCEECCCCEEECCCEEEEECCCCCCCCCCEEEECCCEEEEEECCCCCCEEEEEEEEEEC GGTLHVKFASGYSPKVGDTITVIDGAGSNRQFTSVVVDGFKATALYTSTGIQIRLDA CCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEECC >Mature Secondary Structure SINTTRFQSGLVAVCGALALTACGGGDDTAAGDNSVATVQAIPAPPADPGFVDSAPVAT CCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCHH SVPAFVDNIATNQRGDARYATLGTNAGVRLFTRFLDLWQPLTEIVDAGVSAPANGSFPAV CCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEE VASTWTGLPNDGTAGGTQLNLPVLNANVQYVVSATTGRTQAQADAAYFDDRRGKGYSVTD EEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCHHCCHHHHHCCCCCCEEECC GMGPLTTTWRTLTQQTTSITTVPADATTVLYNDSGNNTGVSTASGNTTFGKVVDLINTMG CCCCCHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCEEECCCCCHHHHHHHHHHHHC NNASTEPAKRFYKYARPYRWSSSVVVVPTLVPAESSNPATDGGFISGHSAEAVRDAMAMA CCCCCHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCCCEECCCCHHHHHHHHHHH YLVPERFQQMLARGLELGENRIFAGMHSPLDVIGGRMLGLAAVAANLYDPANATLKATAY HHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHCCHHHHHHHHHHHCCCCCCCEEEEEEE TQAHTALMAQTGTDATTFAAFAQSGTLTTDRFADYATNQANFTRRMTFGFSQINSTALAP HHHHHEEEEECCCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEEECHHHCCCCEECC VVPKGAEVLLETRFPYLSADQRRVVLKTTELASGYPVMDDAEGWGRLNLFAAADGYGAFN CCCCCCEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCC GSVVVSMDASQGGFNAADTWRNAVAGAGKLTLQGTGTLRLAGSNTYTGGTQVAGGVLGAD CCEEEEEECCCCCCCHHHHHHHHHCCCCEEEEECCCEEEECCCCCCCCCCHHCCCEECCC SATAFGTGDVYLGGGTLVVNAPSALNVAGKFTQLQGTTLELDIGANGQGKLSVAGLTTIA CCCEECCCCEEECCCEEEEECCCCCCCCCCEEEECCCEEEEEECCCCCCEEEEEEEEEEC GGTLHVKFASGYSPKVGDTITVIDGAGSNRQFTSVVVDGFKATALYTSTGIQIRLDA CCEEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEEEECCEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA