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The map label for this gene is ygiD [H]

Identifier: 17544734

GI number: 17544734

Start: 16566

End: 17456

Strand: Direct

Name: ygiD [H]

Synonym: RSc0015

Alternate gene names: 17544734

Gene position: 16566-17456 (Clockwise)

Preceding gene: 17544733

Following gene: 17544736

Centisome position: 0.45

GC content: 72.5

Gene sequence:

>891_bases
ATGCTTCCCGTGCTCTATCTCTCCCATGGGTCGCCGATGCTGGCGGCTGATCCCGGTCCTGTCGGCGCGGCCCTGGCGGC
GCTCGGGCGAGACGTGGCGGCGCTGTCGCCGCGTGCCATCGTGGTGGTGTCGCCGCACTGGATGACGCGCCGCCCCGCCG
TGACGGCACGCCCGCAGCAGGAGGCGTGGCACGATTTCGGCGGCTTCCCGCCGCAGCTGTACGCACTGGAATATGCCCCG
CCGGGTGCGCCCGTGCTGGCCGAGCGCATCCGCACGCTGATCGACGGCAATATCGTGCCCGGGCTGGAGGAGCAGGCGTC
CACCGTGCTCGACCCGCGCCAGCCGCTCGACCATGGCGCGTGGATTCCGCTGATGCTGATGCTGCCCGAGGCGACCATCC
CGGTGGTGCAGGTCTCGCTGATGCCGGGCCTGTCGCCGGCCTGCCAGATGGCGATGGGCCGCACGCTCGCGCCGCTGCGC
GACGAAGGCGTGCTGATCATCGGCTCCGGGAGCTTCACGCACAACCTGCGGGCGCTCATGCGCGGCGCCGGCATGGCACA
GCACGGGGTGCCGGTCGAGCCGTGGGTGGAGGCCTTCCGTGAATGGATGGTCGAAGCCATGACCGAAGGCATCCGCACCG
GCGATTTCGCCACCTTCTGCGACTACCGCGCGCGGGCGCCGCATGCCGCCCACGCCCACCCGACCGACGAGCACCTGATG
CCGCTGTACGTGGCCCTGGGTGCCGCCATGGGCCAGCCGGAGCAGGCCACGCCGGGCGGCGTGCAGGCCCGGCACGTGGT
CGACACCGTCACCTACGGCGCGCTGGCGATGGACAGCTTCCGCTTCGACGGCGCGGGCGCCAACCAGCCGCAGCTGCGCG
CCGCGGCCTGA

Upstream 100 bases:

>100_bases
GTGCTGCTATTCAATTTTCCTGATGGCACTCTCCAAATCCATGCAGCCTAGTCGTGCGTGGGTGGCGCAGAATGGTGGCA
CCAAGTTCAGGAAATTTGAC

Downstream 100 bases:

>100_bases
CTCCGGGGCCGCGCGACGGCTGACCTCAGGCGCGGATCAGCGCCGGCGCCAGCGCGGTCGGGTTGGCCACGCTGTCGACA
TTCCCCTGCAGGATGTCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MLPVLYLSHGSPMLAADPGPVGAALAALGRDVAALSPRAIVVVSPHWMTRRPAVTARPQQEAWHDFGGFPPQLYALEYAP
PGAPVLAERIRTLIDGNIVPGLEEQASTVLDPRQPLDHGAWIPLMLMLPEATIPVVQVSLMPGLSPACQMAMGRTLAPLR
DEGVLIIGSGSFTHNLRALMRGAGMAQHGVPVEPWVEAFREWMVEAMTEGIRTGDFATFCDYRARAPHAAHAHPTDEHLM
PLYVALGAAMGQPEQATPGGVQARHVVDTVTYGALAMDSFRFDGAGANQPQLRAAA

Sequences:

>Translated_296_residues
MLPVLYLSHGSPMLAADPGPVGAALAALGRDVAALSPRAIVVVSPHWMTRRPAVTARPQQEAWHDFGGFPPQLYALEYAP
PGAPVLAERIRTLIDGNIVPGLEEQASTVLDPRQPLDHGAWIPLMLMLPEATIPVVQVSLMPGLSPACQMAMGRTLAPLR
DEGVLIIGSGSFTHNLRALMRGAGMAQHGVPVEPWVEAFREWMVEAMTEGIRTGDFATFCDYRARAPHAAHAHPTDEHLM
PLYVALGAAMGQPEQATPGGVQARHVVDTVTYGALAMDSFRFDGAGANQPQLRAAA
>Mature_296_residues
MLPVLYLSHGSPMLAADPGPVGAALAALGRDVAALSPRAIVVVSPHWMTRRPAVTARPQQEAWHDFGGFPPQLYALEYAP
PGAPVLAERIRTLIDGNIVPGLEEQASTVLDPRQPLDHGAWIPLMLMLPEATIPVVQVSLMPGLSPACQMAMGRTLAPLR
DEGVLIIGSGSFTHNLRALMRGAGMAQHGVPVEPWVEAFREWMVEAMTEGIRTGDFATFCDYRARAPHAAHAHPTDEHLM
PLYVALGAAMGQPEQATPGGVQARHVVDTVTYGALAMDSFRFDGAGANQPQLRAAA

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=283, Percent_Identity=34.6289752650177, Blast_Score=140, Evalue=9e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 31587; Mature: 31587

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPVLYLSHGSPMLAADPGPVGAALAALGRDVAALSPRAIVVVSPHWMTRRPAVTARPQQ
CCEEEEECCCCCEEECCCCCHHHHHHHHCCHHHHCCCCEEEEECCCCCCCCCCCCCCCHH
EAWHDFGGFPPQLYALEYAPPGAPVLAERIRTLIDGNIVPGLEEQASTVLDPRQPLDHGA
HHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCC
WIPLMLMLPEATIPVVQVSLMPGLSPACQMAMGRTLAPLRDEGVLIIGSGSFTHNLRALM
CCCCEEECCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHH
RGAGMAQHGVPVEPWVEAFREWMVEAMTEGIRTGDFATFCDYRARAPHAAHAHPTDEHLM
HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHH
PLYVALGAAMGQPEQATPGGVQARHVVDTVTYGALAMDSFRFDGAGANQPQLRAAA
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCCCC
>Mature Secondary Structure
MLPVLYLSHGSPMLAADPGPVGAALAALGRDVAALSPRAIVVVSPHWMTRRPAVTARPQQ
CCEEEEECCCCCEEECCCCCHHHHHHHHCCHHHHCCCCEEEEECCCCCCCCCCCCCCCHH
EAWHDFGGFPPQLYALEYAPPGAPVLAERIRTLIDGNIVPGLEEQASTVLDPRQPLDHGA
HHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCC
WIPLMLMLPEATIPVVQVSLMPGLSPACQMAMGRTLAPLRDEGVLIIGSGSFTHNLRALM
CCCCEEECCCCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHH
RGAGMAQHGVPVEPWVEAFREWMVEAMTEGIRTGDFATFCDYRARAPHAAHAHPTDEHLM
HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHH
PLYVALGAAMGQPEQATPGGVQARHVVDTVTYGALAMDSFRFDGAGANQPQLRAAA
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCEECCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]