| Definition | Ralstonia solanacearum GMI1000, complete genome. |
|---|---|
| Accession | NC_003295 |
| Length | 3,716,413 |
Click here to switch to the map view.
The map label for this gene is 17544726
Identifier: 17544726
GI number: 17544726
Start: 5188
End: 5721
Strand: Direct
Name: 17544726
Synonym: RSc0007
Alternate gene names: NA
Gene position: 5188-5721 (Clockwise)
Preceding gene: 17544725
Following gene: 17544731
Centisome position: 0.14
GC content: 66.67
Gene sequence:
>534_bases ATGGGCCGGGGCAATGACTACACCTGGTGGCGCAAAGCTGGCGAAGCCGCCGAAGCGCTTTTCTACGCCAACGGCTGGGC TGCTCGCGCCGCCTATGCATTGGGTTTGCAAGGCCGCCTGCGGGTCGATCGCCGCGATGTGTATTTGCCGCTGAAGCCGC TCGCCGAGCTGCTCAGGGTTGCGTTCGCCTCGGACTTCCACGCGGGGCCGCTCACCGATCCTCGTCTGCTCGATGCGGTC GTGCGGAGGATCGATGCGTTCGCGCCGCACATCTTGCTGCTGGGTGGAGATTTCGTTTCGCTGCATCACCGGCATGTCTC GTCGCTGGCGGTCCGGCTCGGCGAACTGCGTGTCCCGGCCGGCATGTTCGGTGTCTACGGCAAACGCGGCAAGCCGGAGT GGGCTGTGTGGCGTGGCCGCGCGTTCAAGGCGCGCGAGCATTGTCGGTACGCAGACCGGCATGCCGCTCGGCTTCCCGAT TACGCCGTGCCGCCCGCACCTCGCCGCTGTATTCGACGGCGAACAGCGCGATGA
Upstream 100 bases:
>100_bases TCGTCGCAGCGGCTTGTCGGCGCCATGCCGTGGGCGACCTGTTGACGGTGCGCTCACGTCATTTCGTCTCAGTCACGTCT GAACTTGGTTGTTTTCGATC
Downstream 100 bases:
>100_bases TGGCCAGCACGACGCCGGCTCCCAGCAACCATTGATGGATCAGGCTCATGGCCGTGCGGCGCTTGCCGCCCAGGATTGCT CACGTCTTCAGCGTACGGTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MGRGNDYTWWRKAGEAAEALFYANGWAARAAYALGLQGRLRVDRRDVYLPLKPLAELLRVAFASDFHAGPLTDPRLLDAV VRRIDAFAPHILLLGGDFVSLHHRHVSSLAVRLGELRVPAGMFGVYGKRGKPEWAVWRGRAFKAREHCRYADRHAARLPD YAVPPAPRRCIRRRTAR
Sequences:
>Translated_177_residues MGRGNDYTWWRKAGEAAEALFYANGWAARAAYALGLQGRLRVDRRDVYLPLKPLAELLRVAFASDFHAGPLTDPRLLDAV VRRIDAFAPHILLLGGDFVSLHHRHVSSLAVRLGELRVPAGMFGVYGKRGKPEWAVWRGRAFKAREHCRYADRHAARLPD YAVPPAPRRCIRRRTAR >Mature_176_residues GRGNDYTWWRKAGEAAEALFYANGWAARAAYALGLQGRLRVDRRDVYLPLKPLAELLRVAFASDFHAGPLTDPRLLDAVV RRIDAFAPHILLLGGDFVSLHHRHVSSLAVRLGELRVPAGMFGVYGKRGKPEWAVWRGRAFKAREHCRYADRHAARLPDY AVPPAPRRCIRRRTAR
Specific function: Unknown
COG id: COG1408
COG function: function code R; Predicted phosphohydrolases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20048; Mature: 19917
Theoretical pI: Translated: 11.45; Mature: 11.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRGNDYTWWRKAGEAAEALFYANGWAARAAYALGLQGRLRVDRRDVYLPLKPLAELLRV CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEECCCCEEECHHHHHHHHHH AFASDFHAGPLTDPRLLDAVVRRIDAFAPHILLLGGDFVSLHHRHVSSLAVRLGELRVPA HHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC GMFGVYGKRGKPEWAVWRGRAFKAREHCRYADRHAARLPDYAVPPAPRRCIRRRTAR HHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC >Mature Secondary Structure GRGNDYTWWRKAGEAAEALFYANGWAARAAYALGLQGRLRVDRRDVYLPLKPLAELLRV CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCEEECCCCEEECHHHHHHHHHH AFASDFHAGPLTDPRLLDAVVRRIDAFAPHILLLGGDFVSLHHRHVSSLAVRLGELRVPA HHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC GMFGVYGKRGKPEWAVWRGRAFKAREHCRYADRHAARLPDYAVPPAPRRCIRRRTAR HHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA