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The map label for this gene is rcaC [H]

Identifier: 17232666

GI number: 17232666

Start: 6172090

End: 6173895

Strand: Reverse

Name: rcaC [H]

Synonym: all5174

Alternate gene names: 17232666

Gene position: 6173895-6172090 (Counterclockwise)

Preceding gene: 17232668

Following gene: 17232665

Centisome position: 96.26

GC content: 42.8

Gene sequence:

>1806_bases
ATGAGAATTTTATTAGTAGAAGATGACGAACTGATTGGCGAATTACTTGTTAAGTCGCTAACAAGTCAGCATTATACTGT
TGATTTCGCCAAAGACGGACAAGAAGGCTGGGATTTTGCGGAGTTATATACTTATGATTTGATTCTGTTAGATTTGATCT
TGCCTAAGCTGGATGGAATTAGTTTCTGTCGGCAGTTACGAGCTAGTGGTAATCAAACTCCTATTCTCCTGTTAACCTCC
CAAGATACAAGTATCACTAAGGTTACAGGCTTAGACGCTGGAGCAGATGATTATGTGGCAAAACCTTTTGATTTTCAAGA
GTTATTAGCTAGAATTCGGGCTTTATTACGTCGGGGTGGTTCAGCTTTACCGCCTCTGTTGGAATGGAATAACCTCCGGC
TTGACCCAAGTACTTGTGAAGTCGCTTGTGATGGAAAACTCTTACATTTAACTCCTAAAGAATACGGTTTGCTAGAACTG
TTTCTCCGCAATAGTCACCGCATTTTTAGTTGTAGCGCTTTAATAGACCAATTGTGGTCATTTGAAGAACCACCAACAGA
AGATACAGTGAGATCCCATATCAAGGGATTGAGGCAAAAGCTGAAAGCAGCCGGAGTAGTTGAAGATCCCATTGATACAG
TTTATGGGATTGGGTATCGGCTCAAACCGGTGCAACCAGGAAGAGAAGAAGAATTAAATACTGAAAAAGTTGTCGCTGCG
ATCGCCAATCCGGTCGAGAATGAGGTAAGAAAAGTCTGGGAAGATGTAGTAGAGAAAATAGAACAGCGCGTAGCCGTAAT
TGAACAAGCTTCTCATAAACTGCTACAGAACAAAGTCAGTGAGGAAATACTGTCAAAAGCCAAGGTAGAAGCTCACAAAT
TAGCTGGTTCTTTGGGAATGTTCGGCTCTGATGAGGGTTCCCAGATAGCACAAGAAATAGAATCTTTGTTAGATAATGGC
AAAAAGCTGAAAGCTTCAGGTGGGAAGCATTTGGGGCAAGTGGTTGAGGCATTACACCAAGAATTAGAAAATTTAAAATC
TGGGTATAAAACAGAACTATCAGTAGTTGAAACAAAAGCAGACGATCGCCCCTTGGTACTAGTTATTGATCAAGACCAGG
AATTAGTCAGGGAGAGCAGGAGTCAGGGTTCAGAGGCGATCGCCCCTGGGCAATTAACAGATGCCAGAGTGATGATTGTA
GACGATGACCCGCAAATATTAACTACACTCCAGACTTTACTCAGTGCTTGGGGCATCAAAGTCTATACTCTCCCTCATCC
CCAGGGATTTTTGGCAGCGAGGTTAGGGAATTTAGCAGAAATAGATACGCTGACCTTGGTAGCTAATCGCCGTAAATCCA
CCCAGGAATTAAACCATTACCTTCAGTGGTGTCATACTCACCAGCAAACCCTGAGCTTCGCTGTTGTAAAACTGGATGGA
CTCAAGCAAATTAATTATAACTATGGTCATGAAATAGGCGATCGCGTCTTATCTCAACTGGGCGAACTGTTAAGGCAAAT
GTTCCATAGTCAAGATGTAGTCGGACGCTGGGGAGGCACAGAGTTTATCTTAGGAATGGCAGGAATAACCAAAGGTGAAG
GGGTAAGGCGGCTAGGGGAATTACTGAAAACTTTCCGGCAAATTGAATTTATTAATACAAGTAATCAATCATTCCACGCC
ACCTTGAGCGCCGCAGTAGTGGAATATCCCCAAGATGGCGACAAACTTGAAGTGCTATATCAAGCTGCTGACATAGTTCT
TCACCAATCAAAGGCAACTGGAAGAAATCGGGTGTTGAGTAGTTGA

Upstream 100 bases:

>100_bases
ATATAAGTTAGCCTTAGAGTGTGATTTTTAAACAGATTTTGTATCCAATTATTTATTTTTGGCAATTAATAATAAGTCGT
AATTGCGGTGATTTACCGCC

Downstream 100 bases:

>100_bases
ATCAGGTAAGGAACAGGAGAAAAAATTTTTATTCCCCATTCTCCACTCCCTTTTCTAGGAGAACATATAGCCGTAGCCAG
ATAGATTAGGACATCAAGGC

Product: two-component response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 601; Mature: 601

Protein sequence:

>601_residues
MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGQEGWDFAELYTYDLILLDLILPKLDGISFCRQLRASGNQTPILLLTS
QDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGGSALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLEL
FLRNSHRIFSCSALIDQLWSFEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLKPVQPGREEELNTEKVVAA
IANPVENEVRKVWEDVVEKIEQRVAVIEQASHKLLQNKVSEEILSKAKVEAHKLAGSLGMFGSDEGSQIAQEIESLLDNG
KKLKASGGKHLGQVVEALHQELENLKSGYKTELSVVETKADDRPLVLVIDQDQELVRESRSQGSEAIAPGQLTDARVMIV
DDDPQILTTLQTLLSAWGIKVYTLPHPQGFLAARLGNLAEIDTLTLVANRRKSTQELNHYLQWCHTHQQTLSFAVVKLDG
LKQINYNYGHEIGDRVLSQLGELLRQMFHSQDVVGRWGGTEFILGMAGITKGEGVRRLGELLKTFRQIEFINTSNQSFHA
TLSAAVVEYPQDGDKLEVLYQAADIVLHQSKATGRNRVLSS

Sequences:

>Translated_601_residues
MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGQEGWDFAELYTYDLILLDLILPKLDGISFCRQLRASGNQTPILLLTS
QDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGGSALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLEL
FLRNSHRIFSCSALIDQLWSFEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLKPVQPGREEELNTEKVVAA
IANPVENEVRKVWEDVVEKIEQRVAVIEQASHKLLQNKVSEEILSKAKVEAHKLAGSLGMFGSDEGSQIAQEIESLLDNG
KKLKASGGKHLGQVVEALHQELENLKSGYKTELSVVETKADDRPLVLVIDQDQELVRESRSQGSEAIAPGQLTDARVMIV
DDDPQILTTLQTLLSAWGIKVYTLPHPQGFLAARLGNLAEIDTLTLVANRRKSTQELNHYLQWCHTHQQTLSFAVVKLDG
LKQINYNYGHEIGDRVLSQLGELLRQMFHSQDVVGRWGGTEFILGMAGITKGEGVRRLGELLKTFRQIEFINTSNQSFHA
TLSAAVVEYPQDGDKLEVLYQAADIVLHQSKATGRNRVLSS
>Mature_601_residues
MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGQEGWDFAELYTYDLILLDLILPKLDGISFCRQLRASGNQTPILLLTS
QDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGGSALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLEL
FLRNSHRIFSCSALIDQLWSFEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLKPVQPGREEELNTEKVVAA
IANPVENEVRKVWEDVVEKIEQRVAVIEQASHKLLQNKVSEEILSKAKVEAHKLAGSLGMFGSDEGSQIAQEIESLLDNG
KKLKASGGKHLGQVVEALHQELENLKSGYKTELSVVETKADDRPLVLVIDQDQELVRESRSQGSEAIAPGQLTDARVMIV
DDDPQILTTLQTLLSAWGIKVYTLPHPQGFLAARLGNLAEIDTLTLVANRRKSTQELNHYLQWCHTHQQTLSFAVVKLDG
LKQINYNYGHEIGDRVLSQLGELLRQMFHSQDVVGRWGGTEFILGMAGITKGEGVRRLGELLKTFRQIEFINTSNQSFHA
TLSAAVVEYPQDGDKLEVLYQAADIVLHQSKATGRNRVLSS

Specific function: Required for chromatic adaptation. Thought to be a positive regulator of phycobiliproteins [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 response regulatory domains [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=221, Percent_Identity=39.8190045248869, Blast_Score=159, Evalue=4e-40,
Organism=Escherichia coli, GI1786784, Length=225, Percent_Identity=39.1111111111111, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI87082012, Length=230, Percent_Identity=36.9565217391304, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1788394, Length=227, Percent_Identity=34.8017621145374, Blast_Score=135, Evalue=8e-33,
Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=37.5565610859729, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=35.5855855855856, Blast_Score=132, Evalue=7e-32,
Organism=Escherichia coli, GI1789809, Length=234, Percent_Identity=32.4786324786325, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI1787375, Length=219, Percent_Identity=33.7899543378995, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1786599, Length=223, Percent_Identity=34.0807174887892, Blast_Score=122, Evalue=6e-29,
Organism=Escherichia coli, GI1786911, Length=221, Percent_Identity=34.841628959276, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=35.3711790393013, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1790863, Length=229, Percent_Identity=30.5676855895196, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI1787229, Length=227, Percent_Identity=33.920704845815, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI87082007, Length=161, Percent_Identity=33.5403726708075, Blast_Score=81, Evalue=2e-16,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=28.0487804878049, Blast_Score=76, Evalue=7e-15,
Organism=Escherichia coli, GI1788550, Length=108, Percent_Identity=34.2592592592593, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=28.755364806867, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1790437, Length=114, Percent_Identity=31.5789473684211, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1787802, Length=163, Percent_Identity=28.2208588957055, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI145693134, Length=158, Percent_Identity=27.2151898734177, Blast_Score=63, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=114, Percent_Identity=35.9649122807018, Blast_Score=73, Evalue=1e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR008207
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01627 Hpt; PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 66978; Mature: 66978

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: PS50894 HPT ; PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF ; PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGQEGWDFAELYTYDLILLDLILPKLDGI
CEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
SFCRQLRASGNQTPILLLTSQDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGG
HHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS
CCCCCCCCCCCEEECCCCCEEEECCEEEEECCCHHHHHHHHHCCCCCEEEHHHHHHHHHC
FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLKPVQPGREEELNTEKVVAA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEEECCCCCCCHHHCCHHHHHHH
IANPVENEVRKVWEDVVEKIEQRVAVIEQASHKLLQNKVSEEILSKAKVEAHKLAGSLGM
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FGSDEGSQIAQEIESLLDNGKKLKASGGKHLGQVVEALHQELENLKSGYKTELSVVETKA
CCCCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
DDRPLVLVIDQDQELVRESRSQGSEAIAPGQLTDARVMIVDDDPQILTTLQTLLSAWGIK
CCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEE
VYTLPHPQGFLAARLGNLAEIDTLTLVANRRKSTQELNHYLQWCHTHQQTLSFAVVKLDG
EEECCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEECC
LKQINYNYGHEIGDRVLSQLGELLRQMFHSQDVVGRWGGTEFILGMAGITKGEGVRRLGE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHCCCCCCHHHHHHHH
LLKTFRQIEFINTSNQSFHATLSAAVVEYPQDGDKLEVLYQAADIVLHQSKATGRNRVLS
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
S
C
>Mature Secondary Structure
MRILLVEDDELIGELLVKSLTSQHYTVDFAKDGQEGWDFAELYTYDLILLDLILPKLDGI
CEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCHH
SFCRQLRASGNQTPILLLTSQDTSITKVTGLDAGADDYVAKPFDFQELLARIRALLRRGG
HHHHHHHHCCCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCC
SALPPLLEWNNLRLDPSTCEVACDGKLLHLTPKEYGLLELFLRNSHRIFSCSALIDQLWS
CCCCCCCCCCCEEECCCCCEEEECCEEEEECCCHHHHHHHHHCCCCCEEEHHHHHHHHHC
FEEPPTEDTVRSHIKGLRQKLKAAGVVEDPIDTVYGIGYRLKPVQPGREEELNTEKVVAA
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCEEECCCCCCCHHHCCHHHHHHH
IANPVENEVRKVWEDVVEKIEQRVAVIEQASHKLLQNKVSEEILSKAKVEAHKLAGSLGM
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
FGSDEGSQIAQEIESLLDNGKKLKASGGKHLGQVVEALHQELENLKSGYKTELSVVETKA
CCCCCHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
DDRPLVLVIDQDQELVRESRSQGSEAIAPGQLTDARVMIVDDDPQILTTLQTLLSAWGIK
CCCCEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEE
VYTLPHPQGFLAARLGNLAEIDTLTLVANRRKSTQELNHYLQWCHTHQQTLSFAVVKLDG
EEECCCCCCHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHEEEECC
LKQINYNYGHEIGDRVLSQLGELLRQMFHSQDVVGRWGGTEFILGMAGITKGEGVRRLGE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHCCCCCCHHHHHHHH
LLKTFRQIEFINTSNQSFHATLSAAVVEYPQDGDKLEVLYQAADIVLHQSKATGRNRVLS
HHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
S
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1409650 [H]