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The map label for this gene is apl [H]

Identifier: 17232585

GI number: 17232585

Start: 6064227

End: 6064844

Strand: Reverse

Name: apl [H]

Synonym: all5093

Alternate gene names: 17232585

Gene position: 6064844-6064227 (Counterclockwise)

Preceding gene: 17232586

Following gene: 17232583

Centisome position: 94.56

GC content: 41.59

Gene sequence:

>618_bases
ATGTCATCCGACTGGATAAAAAATATTATTGAATCTCTGGGTTATTGGGGAATTGGTCTTTTAATGTTTGTAGAGAACCT
GTTTCCGCCAATTCCTTCAGAATTAATCATGCCATTGGCCGGTTACACAGCCAACTTGCCAGGCTCAAGACTGAACATCA
TAGGTGTGTTTATTGCTGGACTTTTAGGTTCTACAATTGGCGCACTTATCTGGTATTATCCAGGGAAGTTTTTGGGTGAA
CAGCGTTTACGATATTTAGCAGATAAATATGGCAAGTGGATTAGTGTATCTAGCAAAGATATAACCAAAGCAAAGCGCTG
GTTTGACTCTCAAGGTAACAAGGCGGTTTTCATGGGTCGTCTGATTCCGGGAGTTCGGACTTTAATTTCCGTACCGGCAG
GGGTCAGTAATATGCCCTTGCTACCTTTTCTATTTTATACAACTTTAGGTAGCGCCGCCTGGGTTGGTTTGTTAACATAC
TCAGGGTATCTTTTAGGTAGTCAGTATGAACTTGTGGATAAGTACCTTGCCCCTGTATCCAAAATTGTACTAGGGGCTTT
ATTTCTGGTGTTTGTACTCTGGGCAGTCAAACGTAAGCTTAGAAACACCAGAATTTGA

Upstream 100 bases:

>100_bases
TCCAGACCCTAATTTGTTACCTTGAAGAAGGGAAAATTGTTAAGTTTTACTAAAACTAGAGTTAAACTTAGCAACTAAAA
TAATACAACAGTCCCAAAAG

Downstream 100 bases:

>100_bases
AGCAAAGTTCTTTTTTGTTTACAACTGGGGGTTACATCTGGTAAAAATTCGCCTACACTATGCCAAATAATGCTGAAGAA
GCGATCGCCTAAATTTTACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MSSDWIKNIIESLGYWGIGLLMFVENLFPPIPSELIMPLAGYTANLPGSRLNIIGVFIAGLLGSTIGALIWYYPGKFLGE
QRLRYLADKYGKWISVSSKDITKAKRWFDSQGNKAVFMGRLIPGVRTLISVPAGVSNMPLLPFLFYTTLGSAAWVGLLTY
SGYLLGSQYELVDKYLAPVSKIVLGALFLVFVLWAVKRKLRNTRI

Sequences:

>Translated_205_residues
MSSDWIKNIIESLGYWGIGLLMFVENLFPPIPSELIMPLAGYTANLPGSRLNIIGVFIAGLLGSTIGALIWYYPGKFLGE
QRLRYLADKYGKWISVSSKDITKAKRWFDSQGNKAVFMGRLIPGVRTLISVPAGVSNMPLLPFLFYTTLGSAAWVGLLTY
SGYLLGSQYELVDKYLAPVSKIVLGALFLVFVLWAVKRKLRNTRI
>Mature_204_residues
SSDWIKNIIESLGYWGIGLLMFVENLFPPIPSELIMPLAGYTANLPGSRLNIIGVFIAGLLGSTIGALIWYYPGKFLGEQ
RLRYLADKYGKWISVSSKDITKAKRWFDSQGNKAVFMGRLIPGVRTLISVPAGVSNMPLLPFLFYTTLGSAAWVGLLTYS
GYLLGSQYELVDKYLAPVSKIVLGALFLVFVLWAVKRKLRNTRI

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI1788656, Length=151, Percent_Identity=27.8145695364238, Blast_Score=68, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 22804; Mature: 22673

Theoretical pI: Translated: 10.33; Mature: 10.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSDWIKNIIESLGYWGIGLLMFVENLFPPIPSELIMPLAGYTANLPGSRLNIIGVFIAG
CCHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LLGSTIGALIWYYPGKFLGEQRLRYLADKYGKWISVSSKDITKAKRWFDSQGNKAVFMGR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHCCCCCCEEEHHH
LIPGVRTLISVPAGVSNMPLLPFLFYTTLGSAAWVGLLTYSGYLLGSQYELVDKYLAPVS
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
KIVLGALFLVFVLWAVKRKLRNTRI
HHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SSDWIKNIIESLGYWGIGLLMFVENLFPPIPSELIMPLAGYTANLPGSRLNIIGVFIAG
CHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LLGSTIGALIWYYPGKFLGEQRLRYLADKYGKWISVSSKDITKAKRWFDSQGNKAVFMGR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCEEECCHHHHHHHHHHHCCCCCCEEEHHH
LIPGVRTLISVPAGVSNMPLLPFLFYTTLGSAAWVGLLTYSGYLLGSQYELVDKYLAPVS
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
KIVLGALFLVFVLWAVKRKLRNTRI
HHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11337471 [H]