Click here to switch to the map view.

The map label for this gene is 17232565

Identifier: 17232565

GI number: 17232565

Start: 6043031

End: 6044458

Strand: Reverse

Name: 17232565

Synonym: all5073

Alternate gene names: NA

Gene position: 6044458-6043031 (Counterclockwise)

Preceding gene: 17232566

Following gene: 17232564

Centisome position: 94.24

GC content: 44.33

Gene sequence:

>1428_bases
ATGAATTTAGTCTGGCAACGATTTACTTTATCTTCTTTACCTCTAAAACAGTTTCTAGCTACAAGTTACTTACATCGGTT
CCTAGTGGGACTGTTATCTTCTTGGCGGCAAACTAGTTTCTTACTTCAGTGGGGAGACATGATTGCAGCTGCGTTACTCA
GCTTGATATATGTTTTGGCTCCCTTTGTCTCTAGTACTCTCGTTGGTGTGCTGCTGATAGCTTGTGTAGGTTTTTGGTTA
TTGTTGACTTTATCTGATGAACCTTCATCAAACAATAACTCCCTTGTTACTCCCATACACCTGTTGGTGTTGCTCTATTG
GGGAATTGCTGCTGTAGCAACGGCATTATCACCAGTCAAGAAGGCAGCATTAACTGATTTGTTAACCTTGACTTTGTATT
TGCTACTATTTGCTCTTTGTGCCAGGGTGCTGAGATCGCCGCGTCTGAGGTCTTGGATCATTACCCTCTACCTATCTGCA
TCACTGGTTGTCAGTATATATGGAATGCGACAATGGCGTTTTGGTGCGCCCCCACTGGCGACTTGGGTTGATCCAGAGTC
CACCTTGTCTAAAACCACAAGGGTTTACAGTTATTTAGGCAATCCCAATTTGTTGGCTGGTTATTTAGTACCGGCGGTGA
TTTTTAGCCTCATGGCAGTTTTTGTCTGGCAGGGCTGGGCAAGAAAATCTTTAGCTGTAACAATGCTGTTTGTAAACACT
GCTTGCCTAATTTTTACTTATAGTCGTGGCGGCTGGATTGGTCTTGTGGTAGCAGTCTTAGGGGCGACGGCATTGCTAGT
TGATTGGTGGAGTGTGCAAATGCCGCCTTTTTGGCGAACCTGGTCATTACCCATACTTTTGGGCGGTTTGATCGGGGTAT
TGTTGATTGCGGTGTTATTTGTCGAGCCAGTCCGGTTTCGAGTTCTCAGTATTTTTGCCGATCGCCAAGATAGCAGCAAT
AATTTTCGCCGCAACGTGTGGGATGCTGTTTTTGAGATGATCCGCGATCGCCCAATTATTGGTATTGGCCCTGGTCATAA
TTCTTTTAATAAAGTCTACCCTCTTTACCAAAGACCTCGTTATAGTGCTTTAAGTGCCTATTCCATCTTCCTAGAGGTGG
CTGTAGAAATGGGTTTTGTTGGACTAGCTTGCTTTCTCTGGTTAATTATCGTCACTATTAATACAGCATTCGTTCAGCTA
CGCCAACTGCGCCAATCTGCCAATGTGCAAGGATTTTGGTTGGTGGGTGCCTTAGCCACATTGCTGGGAATGCTGGCTCA
CGGTACGGTAGACACTATATGGTTTCGTCCGGAAGTTAATACTCTTTGGTGGTTAATGGTTGCTCTCATTGCTAGCTATT
GGACACCTTTATCCGCAAACCAATGTCAAGAACTCAATTTATTTAAGGAAGAACCCACAAGCAACTAG

Upstream 100 bases:

>100_bases
TTAATAATTTGCAATTTGAGTTATTACCTTTTTATAATGAGCCGCATTATGATTAAGTCCAAGTTCACTGGGGGCTTGGT
AATCAAGCGCAGCTTATTTT

Downstream 100 bases:

>100_bases
ATATTGATGAGAGAATGAGGCACGGTGCGATTGAGGTACGCCCTGGCTTGGGCTATCGCTGATGTGAGAAAGAAAATTTC
TGACTCAGCAATCAATGGAG

Product: hypothetical protein

Products: NA

Alternate protein names: O-Antigen Polymerase; Inorganic Carbon Transporter; O-Antigen Polymerase Family; Heptosyltransferase Family; IctB Family Bicarbonate Transporter; Integral Membrane Protein; Bicarbonate Transporter ICT Family Protein

Number of amino acids: Translated: 475; Mature: 475

Protein sequence:

>475_residues
MNLVWQRFTLSSLPLKQFLATSYLHRFLVGLLSSWRQTSFLLQWGDMIAAALLSLIYVLAPFVSSTLVGVLLIACVGFWL
LLTLSDEPSSNNNSLVTPIHLLVLLYWGIAAVATALSPVKKAALTDLLTLTLYLLLFALCARVLRSPRLRSWIITLYLSA
SLVVSIYGMRQWRFGAPPLATWVDPESTLSKTTRVYSYLGNPNLLAGYLVPAVIFSLMAVFVWQGWARKSLAVTMLFVNT
ACLIFTYSRGGWIGLVVAVLGATALLVDWWSVQMPPFWRTWSLPILLGGLIGVLLIAVLFVEPVRFRVLSIFADRQDSSN
NFRRNVWDAVFEMIRDRPIIGIGPGHNSFNKVYPLYQRPRYSALSAYSIFLEVAVEMGFVGLACFLWLIIVTINTAFVQL
RQLRQSANVQGFWLVGALATLLGMLAHGTVDTIWFRPEVNTLWWLMVALIASYWTPLSANQCQELNLFKEEPTSN

Sequences:

>Translated_475_residues
MNLVWQRFTLSSLPLKQFLATSYLHRFLVGLLSSWRQTSFLLQWGDMIAAALLSLIYVLAPFVSSTLVGVLLIACVGFWL
LLTLSDEPSSNNNSLVTPIHLLVLLYWGIAAVATALSPVKKAALTDLLTLTLYLLLFALCARVLRSPRLRSWIITLYLSA
SLVVSIYGMRQWRFGAPPLATWVDPESTLSKTTRVYSYLGNPNLLAGYLVPAVIFSLMAVFVWQGWARKSLAVTMLFVNT
ACLIFTYSRGGWIGLVVAVLGATALLVDWWSVQMPPFWRTWSLPILLGGLIGVLLIAVLFVEPVRFRVLSIFADRQDSSN
NFRRNVWDAVFEMIRDRPIIGIGPGHNSFNKVYPLYQRPRYSALSAYSIFLEVAVEMGFVGLACFLWLIIVTINTAFVQL
RQLRQSANVQGFWLVGALATLLGMLAHGTVDTIWFRPEVNTLWWLMVALIASYWTPLSANQCQELNLFKEEPTSN
>Mature_475_residues
MNLVWQRFTLSSLPLKQFLATSYLHRFLVGLLSSWRQTSFLLQWGDMIAAALLSLIYVLAPFVSSTLVGVLLIACVGFWL
LLTLSDEPSSNNNSLVTPIHLLVLLYWGIAAVATALSPVKKAALTDLLTLTLYLLLFALCARVLRSPRLRSWIITLYLSA
SLVVSIYGMRQWRFGAPPLATWVDPESTLSKTTRVYSYLGNPNLLAGYLVPAVIFSLMAVFVWQGWARKSLAVTMLFVNT
ACLIFTYSRGGWIGLVVAVLGATALLVDWWSVQMPPFWRTWSLPILLGGLIGVLLIAVLFVEPVRFRVLSIFADRQDSSN
NFRRNVWDAVFEMIRDRPIIGIGPGHNSFNKVYPLYQRPRYSALSAYSIFLEVAVEMGFVGLACFLWLIIVTINTAFVQL
RQLRQSANVQGFWLVGALATLLGMLAHGTVDTIWFRPEVNTLWWLMVALIASYWTPLSANQCQELNLFKEEPTSN

Specific function: Unknown

COG id: COG3307

COG function: function code M; Lipid A core - O-antigen ligase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53342; Mature: 53342

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLVWQRFTLSSLPLKQFLATSYLHRFLVGLLSSWRQTSFLLQWGDMIAAALLSLIYVLA
CCCEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PFVSSTLVGVLLIACVGFWLLLTLSDEPSSNNNSLVTPIHLLVLLYWGIAAVATALSPVK
HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHH
KAALTDLLTLTLYLLLFALCARVLRSPRLRSWIITLYLSASLVVSIYGMRQWRFGAPPLA
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
TWVDPESTLSKTTRVYSYLGNPNLLAGYLVPAVIFSLMAVFVWQGWARKSLAVTMLFVNT
CCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
ACLIFTYSRGGWIGLVVAVLGATALLVDWWSVQMPPFWRTWSLPILLGGLIGVLLIAVLF
HHHEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
VEPVRFRVLSIFADRQDSSNNFRRNVWDAVFEMIRDRPIIGIGPGHNSFNKVYPLYQRPR
HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCC
YSALSAYSIFLEVAVEMGFVGLACFLWLIIVTINTAFVQLRQLRQSANVQGFWLVGALAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHH
LLGMLAHGTVDTIWFRPEVNTLWWLMVALIASYWTPLSANQCQELNLFKEEPTSN
HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA