Click here to switch to the map view.

The map label for this gene is cmpR [H]

Identifier: 17232478

GI number: 17232478

Start: 5957521

End: 5958462

Strand: Reverse

Name: cmpR [H]

Synonym: all4986

Alternate gene names: 17232478

Gene position: 5958462-5957521 (Counterclockwise)

Preceding gene: 17232480

Following gene: 17232477

Centisome position: 92.9

GC content: 34.39

Gene sequence:

>942_bases
ATGAACAGTTATCTAGATTTAATCCACAGAGATAGCCTTTTAAATTCTTTAAGCTTAGAGCATTTGAGAATTTTTGAGGC
GACCGCGCGGCATAAAAGTTTTACTCGTGCAGCTGAAGAATTATTCACTACCCAGCCTTCTGTATCACGTCATATTAAAC
AATTAACGGAAACAATTGGTCTGCCGCTATTTAAGTATGTAGATAACTGCATTCAACTGACACCAACGGGTGAAGAATTA
CTAATTATTTATAAGGAAATATTTCAGTATTTAGAAAATTTTGACACAAAATTAGTTGATTTAAAAGATATCAATCAAGG
TTATTTAAAAGTCTCGGCTGTAACTACAAGCAAGTATGTTATCACTAATTTATTGCAACCATTTTGCAAGCTTTATCCCG
ATATTAGAATTGCCCTTGAGTTTACCAATCATGAAGCAATTTTGACAAGAATACAAGACAACGCAGATGACTTTTATATT
CTGGGATATCCACCAAAGAAAGAAGATATTGAAATCAAGCCATTTCTGGATAATCCTTTAGTGGTAGTTGCTCCATCAAA
CCATCCTTTTGTCAATCAATCATCTATTTCTTTGGAACGTTTAGCTAAAGAACAATTAATTATGCGAGAACGAGGCTCGG
AAACTCGTATGGCTGTAGAAATGTTGTTTGCTGAACGGGGAATCAGAATGCCAGTTAAATTAGAGGTAAGTAGTAATAAT
GCAACTAAACAAGCAGTACTTGAAGGTTTAGGTCTAGCAGTTTTATCAATACATACTTTATATCCTGAATTACAACGAAA
TCAGCTATCAATCTTAAATGTAAAGGGATTTCCTATTCTTCAACAATGGCAAATAGCTTACCCAAAGAAAAAATGGTTGT
CTCCTATTGTGAGTACTTTTTTAGAATACTTACTAACAGAGGGTGTGGGGGCTAAAGGTTAG

Upstream 100 bases:

>100_bases
AATCCTCACAAAATCCTCATAATTTTTATTTATTATCTGTAATACTAGCCAAGTACAAGTTACTTTTGCTTGATAGTAGC
TTGTTTGTCGAATTATTTAT

Downstream 100 bases:

>100_bases
AATTTTTGATGCAGGATAAGCTTATATCCCGCCAGTTTCACATATATTATCTCTACGAAAAATATTAAGCATCTAAACTA
TAACCACAGTATAAAAAATT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNSYLDLIHRDSLLNSLSLEHLRIFEATARHKSFTRAAEELFTTQPSVSRHIKQLTETIGLPLFKYVDNCIQLTPTGEEL
LIIYKEIFQYLENFDTKLVDLKDINQGYLKVSAVTTSKYVITNLLQPFCKLYPDIRIALEFTNHEAILTRIQDNADDFYI
LGYPPKKEDIEIKPFLDNPLVVVAPSNHPFVNQSSISLERLAKEQLIMRERGSETRMAVEMLFAERGIRMPVKLEVSSNN
ATKQAVLEGLGLAVLSIHTLYPELQRNQLSILNVKGFPILQQWQIAYPKKKWLSPIVSTFLEYLLTEGVGAKG

Sequences:

>Translated_313_residues
MNSYLDLIHRDSLLNSLSLEHLRIFEATARHKSFTRAAEELFTTQPSVSRHIKQLTETIGLPLFKYVDNCIQLTPTGEEL
LIIYKEIFQYLENFDTKLVDLKDINQGYLKVSAVTTSKYVITNLLQPFCKLYPDIRIALEFTNHEAILTRIQDNADDFYI
LGYPPKKEDIEIKPFLDNPLVVVAPSNHPFVNQSSISLERLAKEQLIMRERGSETRMAVEMLFAERGIRMPVKLEVSSNN
ATKQAVLEGLGLAVLSIHTLYPELQRNQLSILNVKGFPILQQWQIAYPKKKWLSPIVSTFLEYLLTEGVGAKG
>Mature_313_residues
MNSYLDLIHRDSLLNSLSLEHLRIFEATARHKSFTRAAEELFTTQPSVSRHIKQLTETIGLPLFKYVDNCIQLTPTGEEL
LIIYKEIFQYLENFDTKLVDLKDINQGYLKVSAVTTSKYVITNLLQPFCKLYPDIRIALEFTNHEAILTRIQDNADDFYI
LGYPPKKEDIEIKPFLDNPLVVVAPSNHPFVNQSSISLERLAKEQLIMRERGSETRMAVEMLFAERGIRMPVKLEVSSNN
ATKQAVLEGLGLAVLSIHTLYPELQRNQLSILNVKGFPILQQWQIAYPKKKWLSPIVSTFLEYLLTEGVGAKG

Specific function: Activates transcription of the cmpABCD operon under carbon dioxide-limited conditions [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=297, Percent_Identity=28.6195286195286, Blast_Score=107, Evalue=7e-25,
Organism=Escherichia coli, GI1788481, Length=290, Percent_Identity=27.2413793103448, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1788296, Length=248, Percent_Identity=26.6129032258064, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1787879, Length=294, Percent_Identity=23.1292517006803, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI145693105, Length=297, Percent_Identity=23.5690235690236, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1787530, Length=255, Percent_Identity=25.0980392156863, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1789204, Length=247, Percent_Identity=26.7206477732794, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789173, Length=150, Percent_Identity=36, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788748, Length=242, Percent_Identity=23.5537190082645, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788887, Length=296, Percent_Identity=27.7027027027027, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1790399, Length=252, Percent_Identity=21.031746031746, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=23.2876712328767, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1786401, Length=301, Percent_Identity=22.9235880398671, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790208, Length=294, Percent_Identity=24.1496598639456, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1789506, Length=196, Percent_Identity=23.9795918367347, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081904, Length=251, Percent_Identity=23.1075697211155, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788706, Length=143, Percent_Identity=30.7692307692308, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35797; Mature: 35797

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSYLDLIHRDSLLNSLSLEHLRIFEATARHKSFTRAAEELFTTQPSVSRHIKQLTETIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
LPLFKYVDNCIQLTPTGEELLIIYKEIFQYLENFDTKLVDLKDINQGYLKVSAVTTSKYV
CHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCEEEEEEEECHHHH
ITNLLQPFCKLYPDIRIALEFTNHEAILTRIQDNADDFYILGYPPKKEDIEIKPFLDNPL
HHHHHHHHHHHCCCEEEEEEECCCCEEHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCE
VVVAPSNHPFVNQSSISLERLAKEQLIMRERGSETRMAVEMLFAERGIRMPVKLEVSSNN
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCC
ATKQAVLEGLGLAVLSIHTLYPELQRNQLSILNVKGFPILQQWQIAYPKKKWLSPIVSTF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHH
LEYLLTEGVGAKG
HHHHHHCCCCCCC
>Mature Secondary Structure
MNSYLDLIHRDSLLNSLSLEHLRIFEATARHKSFTRAAEELFTTQPSVSRHIKQLTETIG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
LPLFKYVDNCIQLTPTGEELLIIYKEIFQYLENFDTKLVDLKDINQGYLKVSAVTTSKYV
CHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHCCCCEEEEHHCCCCCEEEEEEEECHHHH
ITNLLQPFCKLYPDIRIALEFTNHEAILTRIQDNADDFYILGYPPKKEDIEIKPFLDNPL
HHHHHHHHHHHCCCEEEEEEECCCCEEHHHHHCCCCCEEEECCCCCCCCEEEEEECCCCE
VVVAPSNHPFVNQSSISLERLAKEQLIMRERGSETRMAVEMLFAERGIRMPVKLEVSSNN
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEECCCC
ATKQAVLEGLGLAVLSIHTLYPELQRNQLSILNVKGFPILQQWQIAYPKKKWLSPIVSTF
HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCHHHHHHHHHHHH
LEYLLTEGVGAKG
HHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA