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The map label for this gene is csgD [C]

Identifier: 17232470

GI number: 17232470

Start: 5947510

End: 5948184

Strand: Reverse

Name: csgD [C]

Synonym: all4978

Alternate gene names: 17232470

Gene position: 5948184-5947510 (Counterclockwise)

Preceding gene: 17232472

Following gene: 17232464

Centisome position: 92.74

GC content: 48.0

Gene sequence:

>675_bases
ATGCCTATTTCTCTACATGATGTATTTCATGCGATCGCCAACATCCGTAATGAGCAAGAATTACAACCAACGCTCATGGA
TAAAATTGGCGAATATTTTGGTGTGCAACATTGGGGCATCTATTTAATAGATAGTGAATCAAAAGCTGATACCGAAACTC
AAAGCATCCCCGCCGTCTGCCTAGAAAGTAACCCCGTAGGTCGCTATGTAGTCGAGCGCCACGCCCCCGCCCATGAACAA
TTGATCCTCACCCCAGAAGACTGGAAAGACTTCTGTCCACGCCACGACCACGGACACGTCATGACCGGGCCAATAATTTG
CGATGGCCGTCTCATCGGCACACTCAACTTCGCCCGCGACAAAGGAAAACCAGCTTTTACCGCCAACGACTTAGCCGACC
TCAGCGCCCTGTGCATTCATTTATCAGCCAAACTCGCCACCCTAAAAACCAACCCAAATATATTTAAATCCTCTTCACCC
AGCCCTTTAACACCCCGCGAATTACAAATTGCCGAACTAGTAGCACAAGGACTAACCAACGCAGAAATCGCCGAAAAGCT
TTGGATTACCCAAAACTCCGTAAAACAAGCCCTCAAACGAATGTTCCGCAAACTTGGAGTTTCAGCCCGTGCCGAAATGG
TAGCCAGACTGCAAGACCAGCTAATTCATCGATAA

Upstream 100 bases:

>100_bases
GCTTCTCCTAGCGCGATTAGTTATAGTCGCTTTTTAGTTTTGCTGGTATTAGCATAGAAGTAATTGTTGAGTCCCGCATA
GACCCCAACTGGGTACACTT

Downstream 100 bases:

>100_bases
AATAAAAAATGCAGAAAATATTAAGCGCTACAAGCTTTATCTATTAAGCTTTGTAGCCTTTATATACTTTAGCAAGTCCG
ACAATTTAGAAAAAATCTTG

Product: transcriptional regulator

Products: NA

Alternate protein names: GAF Modulated Transcriptional Regulator LuxR Family; Transcriptional Regulator; LuxR Family GAF Modulated Transcriptional Regulator; Transcriptional Regulator LuxR Family Protein; LuxR Family Transcriptional Regulatory Protein

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MPISLHDVFHAIANIRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKADTETQSIPAVCLESNPVGRYVVERHAPAHEQ
LILTPEDWKDFCPRHDHGHVMTGPIICDGRLIGTLNFARDKGKPAFTANDLADLSALCIHLSAKLATLKTNPNIFKSSSP
SPLTPRELQIAELVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVARLQDQLIHR

Sequences:

>Translated_224_residues
MPISLHDVFHAIANIRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKADTETQSIPAVCLESNPVGRYVVERHAPAHEQ
LILTPEDWKDFCPRHDHGHVMTGPIICDGRLIGTLNFARDKGKPAFTANDLADLSALCIHLSAKLATLKTNPNIFKSSSP
SPLTPRELQIAELVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVARLQDQLIHR
>Mature_223_residues
PISLHDVFHAIANIRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKADTETQSIPAVCLESNPVGRYVVERHAPAHEQL
ILTPEDWKDFCPRHDHGHVMTGPIICDGRLIGTLNFARDKGKPAFTANDLADLSALCIHLSAKLATLKTNPNIFKSSSPS
PLTPRELQIAELVAQGLTNAEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVARLQDQLIHR

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25032; Mature: 24901

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPISLHDVFHAIANIRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKADTETQSIPAVC
CCCCHHHHHHHHHHCCCCHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCEEE
LESNPVGRYVVERHAPAHEQLILTPEDWKDFCPRHDHGHVMTGPIICDGRLIGTLNFARD
ECCCCCCHHHHHCCCCCCCEEEECCCCHHHHCCCCCCCCEEECCEEECCEEEEEEEHHHC
KGKPAFTANDLADLSALCIHLSAKLATLKTNPNIFKSSSPSPLTPRELQIAELVAQGLTN
CCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
AEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVARLQDQLIHR
HHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PISLHDVFHAIANIRNEQELQPTLMDKIGEYFGVQHWGIYLIDSESKADTETQSIPAVC
CCCHHHHHHHHHHCCCCHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCCCEEE
LESNPVGRYVVERHAPAHEQLILTPEDWKDFCPRHDHGHVMTGPIICDGRLIGTLNFARD
ECCCCCCHHHHHCCCCCCCEEEECCCCHHHHCCCCCCCCEEECCEEECCEEEEEEEHHHC
KGKPAFTANDLADLSALCIHLSAKLATLKTNPNIFKSSSPSPLTPRELQIAELVAQGLTN
CCCCCCCHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
AEIAEKLWITQNSVKQALKRMFRKLGVSARAEMVARLQDQLIHR
HHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA