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The map label for this gene is pchR [H]

Identifier: 17232417

GI number: 17232417

Start: 5872967

End: 5873989

Strand: Reverse

Name: pchR [H]

Synonym: all4925

Alternate gene names: 17232417

Gene position: 5873989-5872967 (Counterclockwise)

Preceding gene: 17232418

Following gene: 17232416

Centisome position: 91.58

GC content: 35.48

Gene sequence:

>1023_bases
ATGTATATATTCACTGAAAAACAATATGACGAACTATGGGAAGAAAGTATCAAAACCAACGGCAAACTATTATTAAACCA
TGATGGCTTTGATGAAATTTACCAATTGGAAAATAAGTTTTTTAGTGAATTAACTTACACAGTTGAGCTACGTCCAGGAT
TGACATTAATTGTAGCCGATGCAAGACAGCATCAAAACTTAAAATATTGGAGTATTCACGCTCATCCTTACCCATTAATT
TCTAAATTTCATCTCTCTGGTAATTGTCGGACAGTTACCCCAGGAATGAAAGAGATTCCTGATGATTATATTGAGCAGGT
AGGCAAAAACTATTTATTTTACTTACCTAACGTAGATGAAATTCACGATTTTACAGCAGCAGAGACAATTCTATTTATCA
CCATCCAGATAGATATGGAAGTATTTAAAAATTTTAGTCAAGATTTTGCATCTTTACCTGCTCCTTTACAATCATTAATC
AATAAAAATTATTTGCCAAGGTTTCATTACACTGTCGGAGAAATCACACCAGTGATGTTTATGGTATTGCAGCAACTCCT
TAAACCTCCGTTTCAAGGAATGATGAAACGGATGTATTTAGAAAGTAAAGTTTTAGAATTATTAGCACTGCAATTAAGTC
AGTTTTCCCATCACGAACCAGCGATGACAGCAGTGGCAAATTTACGACCTGTAGATATTGAAAAAGCCTACCATGCTAGA
GATATTATCATGCGTCAGTCCGAAAATCCACCATCGTTGTTGGAGCTAGCGCAATTAGTTGGTTTAGGCGATCGCAAACT
GCGTTACTGTTTTCGAGAAGTGTTTGGGACTACGGTATTTGGTTATTTACATGATTACCGTATGGAGCAAGCAAAAATGA
TGTTAGCTGGTAGTAAAATACAAGTTGCGGAAGTAGCGAATGCTGTCGGCTATTCACATTTAGGTTATTTTGCCAAGGCT
TTTAAGCAGAAATTTGGAGTTTCACCTAAAGAATTTCAATTTGGCAAAAAACAATTGAGTTAA

Upstream 100 bases:

>100_bases
GTTACTAGTTTGGAAGAGCGTTTCGGCACAATGTTCTTGACCCAAGAATATCTGGCAATTCTAACTATCGTATCTGCTTA
AAATTCCTAGATCATTAAAG

Downstream 100 bases:

>100_bases
TATCATCAAAATTTTAAAGTTTTTGTGACAAGCCGCTTCAGTGACAAAAAAATGCAGCTCTACAGATAGACGGAACTATC
GCAAACCTCGTAATCTAACT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MYIFTEKQYDELWEESIKTNGKLLLNHDGFDEIYQLENKFFSELTYTVELRPGLTLIVADARQHQNLKYWSIHAHPYPLI
SKFHLSGNCRTVTPGMKEIPDDYIEQVGKNYLFYLPNVDEIHDFTAAETILFITIQIDMEVFKNFSQDFASLPAPLQSLI
NKNYLPRFHYTVGEITPVMFMVLQQLLKPPFQGMMKRMYLESKVLELLALQLSQFSHHEPAMTAVANLRPVDIEKAYHAR
DIIMRQSENPPSLLELAQLVGLGDRKLRYCFREVFGTTVFGYLHDYRMEQAKMMLAGSKIQVAEVANAVGYSHLGYFAKA
FKQKFGVSPKEFQFGKKQLS

Sequences:

>Translated_340_residues
MYIFTEKQYDELWEESIKTNGKLLLNHDGFDEIYQLENKFFSELTYTVELRPGLTLIVADARQHQNLKYWSIHAHPYPLI
SKFHLSGNCRTVTPGMKEIPDDYIEQVGKNYLFYLPNVDEIHDFTAAETILFITIQIDMEVFKNFSQDFASLPAPLQSLI
NKNYLPRFHYTVGEITPVMFMVLQQLLKPPFQGMMKRMYLESKVLELLALQLSQFSHHEPAMTAVANLRPVDIEKAYHAR
DIIMRQSENPPSLLELAQLVGLGDRKLRYCFREVFGTTVFGYLHDYRMEQAKMMLAGSKIQVAEVANAVGYSHLGYFAKA
FKQKFGVSPKEFQFGKKQLS
>Mature_340_residues
MYIFTEKQYDELWEESIKTNGKLLLNHDGFDEIYQLENKFFSELTYTVELRPGLTLIVADARQHQNLKYWSIHAHPYPLI
SKFHLSGNCRTVTPGMKEIPDDYIEQVGKNYLFYLPNVDEIHDFTAAETILFITIQIDMEVFKNFSQDFASLPAPLQSLI
NKNYLPRFHYTVGEITPVMFMVLQQLLKPPFQGMMKRMYLESKVLELLALQLSQFSHHEPAMTAVANLRPVDIEKAYHAR
DIIMRQSENPPSLLELAQLVGLGDRKLRYCFREVFGTTVFGYLHDYRMEQAKMMLAGSKIQVAEVANAVGYSHLGYFAKA
FKQKFGVSPKEFQFGKKQLS

Specific function: Positive activator of the genes for pyochelin and ferripyochelin receptors [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 39406; Mature: 39406

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYIFTEKQYDELWEESIKTNGKLLLNHDGFDEIYQLENKFFSELTYTVELRPGLTLIVAD
CEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHEEEEEEECCCEEEEEEC
ARQHQNLKYWSIHAHPYPLISKFHLSGNCRTVTPGMKEIPDDYIEQVGKNYLFYLPNVDE
CHHCCCCEEEEEECCCCHHHHEEEECCCCEEECCCHHHCCHHHHHHHCCCEEEECCCHHH
IHDFTAAETILFITIQIDMEVFKNFSQDFASLPAPLQSLINKNYLPRFHYTVGEITPVMF
HHHHHHHCEEEEEEEEECHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHCHHHHHHHHHH
MVLQQLLKPPFQGMMKRMYLESKVLELLALQLSQFSHHEPAMTAVANLRPVDIEKAYHAR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHH
DIIMRQSENPPSLLELAQLVGLGDRKLRYCFREVFGTTVFGYLHDYRMEQAKMMLAGSKI
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QVAEVANAVGYSHLGYFAKAFKQKFGVSPKEFQFGKKQLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
>Mature Secondary Structure
MYIFTEKQYDELWEESIKTNGKLLLNHDGFDEIYQLENKFFSELTYTVELRPGLTLIVAD
CEEECCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHEEEEEEECCCEEEEEEC
ARQHQNLKYWSIHAHPYPLISKFHLSGNCRTVTPGMKEIPDDYIEQVGKNYLFYLPNVDE
CHHCCCCEEEEEECCCCHHHHEEEECCCCEEECCCHHHCCHHHHHHHCCCEEEECCCHHH
IHDFTAAETILFITIQIDMEVFKNFSQDFASLPAPLQSLINKNYLPRFHYTVGEITPVMF
HHHHHHHCEEEEEEEEECHHHHHHHHHHHHHCCHHHHHHHCCCCCCCHHCHHHHHHHHHH
MVLQQLLKPPFQGMMKRMYLESKVLELLALQLSQFSHHEPAMTAVANLRPVDIEKAYHAR
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHH
DIIMRQSENPPSLLELAQLVGLGDRKLRYCFREVFGTTVFGYLHDYRMEQAKMMLAGSKI
HHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
QVAEVANAVGYSHLGYFAKAFKQKFGVSPKEFQFGKKQLS
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8397186; 10984043 [H]