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The map label for this gene is ycf4 [H]

Identifier: 17231781

GI number: 17231781

Start: 5142651

End: 5143247

Strand: Reverse

Name: ycf4 [H]

Synonym: all4289

Alternate gene names: 17231781

Gene position: 5143247-5142651 (Counterclockwise)

Preceding gene: 17231784

Following gene: 17231779

Centisome position: 80.19

GC content: 44.39

Gene sequence:

>597_bases
ATGACGGCATCAACAACAATTAACAAAGGCGATTCACCTAACGGTGACAGTTCCGCTTCCAGCGTCCTCCATCAAAAAGT
TCTCGGTTCTCGTCGATTCAGTAACTACTGGTGGGCAAGTATTGTTACGTTGGGAGCATCGGGCTTTTTTTTGGCAGGCA
TATCCAGTTACTTAAGAGTTAATTTACTCATAGTTACCGACCCAACTCAACTGATATTTGTACCTCAAGGGTTGGTAATG
GGTCTATATGGCACTGCTGGCTTGCTTTTAGCGTCGTATTTGTGGCTGGTTATCCTCTGGGACTTAGGCGGCGGCTACAA
CGATTTCAATCGAGAAACCGGGAATATTAAAATATTTCGTTGGGGATTTCCTGGTAAAAACCGTAAGATTGAAATTGGCA
GTCGTATACAAGATATACAGTCTGTACGTGTAGATATCAAGGAAGGCTTGAATCCTCGCCGCGCGTTATATCTACGCGTT
AAAGGTCGCCGAGATATACCATTGACTAGAGTCGGTCAACCTTTATCTTTGGCGGAATTAGAAACTCAAGGCGCTCAGTT
AGCCCGCTTTTTAGGAGTACCCTTGGAAGGTCTTTAA

Upstream 100 bases:

>100_bases
TTAACTGTCAACGGTTAACTAACTAATCTTGAGCTTGCAAGACATCCTATTCAGGTGGCAGACTCTTAAAAGGGAAGAAC
TCACAGGCCAAGATATTTCC

Downstream 100 bases:

>100_bases
GGGTAATGATTGGATGTAGCTTTAGATTTCCGAAGTTTGGTAGATGAAGAAACAGGGGAGCAAGGGGGAAAAACTTAGAG
AAAGGTGTCCCCCTGTCCTC

Product: photosystem I assembly protein Ycf4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MTASTTINKGDSPNGDSSASSVLHQKVLGSRRFSNYWWASIVTLGASGFFLAGISSYLRVNLLIVTDPTQLIFVPQGLVM
GLYGTAGLLLASYLWLVILWDLGGGYNDFNRETGNIKIFRWGFPGKNRKIEIGSRIQDIQSVRVDIKEGLNPRRALYLRV
KGRRDIPLTRVGQPLSLAELETQGAQLARFLGVPLEGL

Sequences:

>Translated_198_residues
MTASTTINKGDSPNGDSSASSVLHQKVLGSRRFSNYWWASIVTLGASGFFLAGISSYLRVNLLIVTDPTQLIFVPQGLVM
GLYGTAGLLLASYLWLVILWDLGGGYNDFNRETGNIKIFRWGFPGKNRKIEIGSRIQDIQSVRVDIKEGLNPRRALYLRV
KGRRDIPLTRVGQPLSLAELETQGAQLARFLGVPLEGL
>Mature_197_residues
TASTTINKGDSPNGDSSASSVLHQKVLGSRRFSNYWWASIVTLGASGFFLAGISSYLRVNLLIVTDPTQLIFVPQGLVMG
LYGTAGLLLASYLWLVILWDLGGGYNDFNRETGNIKIFRWGFPGKNRKIEIGSRIQDIQSVRVDIKEGLNPRRALYLRVK
GRRDIPLTRVGQPLSLAELETQGAQLARFLGVPLEGL

Specific function: Seems to be required for the assembly of the photosystem I complex [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ycf4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003359
- ProDom:   PD003698 [H]

Pfam domain/function: PF02392 Ycf4 [H]

EC number: NA

Molecular weight: Translated: 21810; Mature: 21678

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASTTINKGDSPNGDSSASSVLHQKVLGSRRFSNYWWASIVTLGASGFFLAGISSYLRV
CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHEE
NLLIVTDPTQLIFVPQGLVMGLYGTAGLLLASYLWLVILWDLGGGYNDFNRETGNIKIFR
EEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
WGFPGKNRKIEIGSRIQDIQSVRVDIKEGLNPRRALYLRVKGRRDIPLTRVGQPLSLAEL
ECCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHCCCCCCHHHH
ETQGAQLARFLGVPLEGL
HHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TASTTINKGDSPNGDSSASSVLHQKVLGSRRFSNYWWASIVTLGASGFFLAGISSYLRV
CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHEE
NLLIVTDPTQLIFVPQGLVMGLYGTAGLLLASYLWLVILWDLGGGYNDFNRETGNIKIFR
EEEEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEE
WGFPGKNRKIEIGSRIQDIQSVRVDIKEGLNPRRALYLRVKGRRDIPLTRVGQPLSLAEL
ECCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHCCCCCCHHHH
ETQGAQLARFLGVPLEGL
HHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA