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The map label for this gene is ycfQ [C]

Identifier: 17231771

GI number: 17231771

Start: 5131864

End: 5132751

Strand: Reverse

Name: ycfQ [C]

Synonym: all4279

Alternate gene names: 17231771

Gene position: 5132751-5131864 (Counterclockwise)

Preceding gene: 17231775

Following gene: 17231768

Centisome position: 80.03

GC content: 40.65

Gene sequence:

>888_bases
ATGAGTAAGAACAAAGCACATATAGAAAGTAATAATGGCGATCGTTTGCCGTCAGCAGAGAAGGTTGATGCAATTCTCAA
GGGTGCAATGCAAGAGTTTTTGACCCACGGCTATGCAGCTACAACAATGGATAGAGTGACAGCAGCAGCCGGAGTCTCGA
AAACAACTGTCTACAGCTACTTTCAAGACAAAGAAGGATTATTTGCCGCTTTGATTGAAAAACTAGCACAGGAAAAATGT
TTGTTAATCCACGACCCGGAATTTCTGCAAGGAGAACCCCGTATTGTTTTACGCCGTTTAGCAACAAATATTTTCGATCA
AGTAGAGAAAGAACCAGTGTTTTTGAGTTTAGTCAGGCTAATTATCGGTGAATCTGGGCGGTTTCCATCCTTAGCAAAAA
CCTTTGTCTGCAACATAGATAAACAAGCTCTAGAGCGTCTGAGTCAATATTTTACAGAGCATTCAGAACTAAAATTACCT
GATCCAGAGGTAGCAGCACGTATTTTTCTTGGTGCAGTAGTACACTTTATCATTCTTCAGTATATGCTCCATAGTCAGGA
TATCTTGCCAATGGAGAGCGATCGCCTGATTGACAATCTGATTAACTTAATCACTATTAATCTTTCCCAGAATACTTCTA
CGAATCAATATTCTGGTACAAGGCAGAAATCACCCAGGCGCAGGCGTACAGCTTCGGGTAAATTCCAGATGGACTATGGT
TCAGAACCTAAACAGTTAAGGTCTATAAGATTGACGGATACAGCCTGGGAACAATTGGCAGAATTAGCAGAGAAAAATAA
TTTAACTCGCAGTGAAATGATTGAAATCTTTGCCCGTGAAGGTTTTTCAGGCAAGCGGACTAATTCTCAATTACCTACGA
TTGGTTAG

Upstream 100 bases:

>100_bases
AAGAGCGTATAGACTGAAAAATGAATCTTCCAGGAGAAATTTCTACAACGCCGGATCATTGATCGATCTAAGCTAGTTTA
TTTAGCGAAAATATAAAAAT

Downstream 100 bases:

>100_bases
TCTTGAGCCTTGAATTATGTATATACATGGAAGGATACAAGAACTAGTGAGGATTAATGTATATACATGGATAAAATCGC
TTCCTAATCCCTTACTGACA

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; TetR-Family Transcriptional Regulator; TetR Family Transcriptional Regulatory Protein; TetR Family Regulatory Protein; TetR/AcrR Family Transcriptional Regulator; Transcriptional Regulatory Protein; Calsymin Transcriptional Regulator; Transcriptional Regulator Tetr Family; Transcription Regulator Protein; Transcriptional Regulator TetR/AcrR Family; Transcriptional Regulator TetR; TetR Family Regulatory

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MSKNKAHIESNNGDRLPSAEKVDAILKGAMQEFLTHGYAATTMDRVTAAAGVSKTTVYSYFQDKEGLFAALIEKLAQEKC
LLIHDPEFLQGEPRIVLRRLATNIFDQVEKEPVFLSLVRLIIGESGRFPSLAKTFVCNIDKQALERLSQYFTEHSELKLP
DPEVAARIFLGAVVHFIILQYMLHSQDILPMESDRLIDNLINLITINLSQNTSTNQYSGTRQKSPRRRRTASGKFQMDYG
SEPKQLRSIRLTDTAWEQLAELAEKNNLTRSEMIEIFAREGFSGKRTNSQLPTIG

Sequences:

>Translated_295_residues
MSKNKAHIESNNGDRLPSAEKVDAILKGAMQEFLTHGYAATTMDRVTAAAGVSKTTVYSYFQDKEGLFAALIEKLAQEKC
LLIHDPEFLQGEPRIVLRRLATNIFDQVEKEPVFLSLVRLIIGESGRFPSLAKTFVCNIDKQALERLSQYFTEHSELKLP
DPEVAARIFLGAVVHFIILQYMLHSQDILPMESDRLIDNLINLITINLSQNTSTNQYSGTRQKSPRRRRTASGKFQMDYG
SEPKQLRSIRLTDTAWEQLAELAEKNNLTRSEMIEIFAREGFSGKRTNSQLPTIG
>Mature_294_residues
SKNKAHIESNNGDRLPSAEKVDAILKGAMQEFLTHGYAATTMDRVTAAAGVSKTTVYSYFQDKEGLFAALIEKLAQEKCL
LIHDPEFLQGEPRIVLRRLATNIFDQVEKEPVFLSLVRLIIGESGRFPSLAKTFVCNIDKQALERLSQYFTEHSELKLPD
PEVAARIFLGAVVHFIILQYMLHSQDILPMESDRLIDNLINLITINLSQNTSTNQYSGTRQKSPRRRRTASGKFQMDYGS
EPKQLRSIRLTDTAWEQLAELAEKNNLTRSEMIEIFAREGFSGKRTNSQLPTIG

Specific function: Unknown

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33353; Mature: 33221

Theoretical pI: Translated: 8.22; Mature: 8.22

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKNKAHIESNNGDRLPSAEKVDAILKGAMQEFLTHGYAATTMDRVTAAAGVSKTTVYSY
CCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHH
FQDKEGLFAALIEKLAQEKCLLIHDPEFLQGEPRIVLRRLATNIFDQVEKEPVFLSLVRL
HHCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IIGESGRFPSLAKTFVCNIDKQALERLSQYFTEHSELKLPDPEVAARIFLGAVVHFIILQ
HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YMLHSQDILPMESDRLIDNLINLITINLSQNTSTNQYSGTRQKSPRRRRTASGKFQMDYG
HHHHCCCCCCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCHHCCCHHHHCCCCCEEECCC
SEPKQLRSIRLTDTAWEQLAELAEKNNLTRSEMIEIFAREGFSGKRTNSQLPTIG
CCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKNKAHIESNNGDRLPSAEKVDAILKGAMQEFLTHGYAATTMDRVTAAAGVSKTTVYSY
CCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHH
FQDKEGLFAALIEKLAQEKCLLIHDPEFLQGEPRIVLRRLATNIFDQVEKEPVFLSLVRL
HHCCCCHHHHHHHHHHHCCCEEEECHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHH
IIGESGRFPSLAKTFVCNIDKQALERLSQYFTEHSELKLPDPEVAARIFLGAVVHFIILQ
HHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
YMLHSQDILPMESDRLIDNLINLITINLSQNTSTNQYSGTRQKSPRRRRTASGKFQMDYG
HHHHCCCCCCCCHHHHHHHHHHHEEEECCCCCCCCCCCCCHHCCCHHHHCCCCCEEECCC
SEPKQLRSIRLTDTAWEQLAELAEKNNLTRSEMIEIFAREGFSGKRTNSQLPTIG
CCHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA