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The map label for this gene is ugpB [H]

Identifier: 17231769

GI number: 17231769

Start: 5129384

End: 5130769

Strand: Direct

Name: ugpB [H]

Synonym: alr4277

Alternate gene names: 17231769

Gene position: 5129384-5130769 (Clockwise)

Preceding gene: 17231767

Following gene: 17231770

Centisome position: 79.97

GC content: 41.63

Gene sequence:

>1386_bases
ATGAAAGTTAAAAAATTGATTAATCTGTTTTATCAACACTGTGGGCGGTTTTTTTTCGCCTCTGATGATTCTAGGGTAAA
AAGAAAAAATTGGCGATTTTACCGATATCGTTGGCTATCGCTGTTTCTAGTAGGAATATTGGTTACAAGCGGATGTCAGG
TAATTCAAAATGGCATGAAGGCAGATAAAGTCATTCATTTAACTTTATGGCATGGGGTGAATCCGCCGCCTAATCGGGAT
GTCTTTCAAAAGCTGGTAGATAAGTTTAACCAAAGCCATAAAGATATTCAGGTAGATGCGATTTACGCTGGGCAACAAGA
CCAACAAATGCCGAAAATTTTGGCAGCTGTCGTAGGTAATGCCTCCCCGGATATTTTATGGTACAACCCAGCAACTACAG
GACAACTAGTAGAACTAAATGCCTTGGTTCCTTTGGACGAAATGTTGGCAAGTTCACAAATTAAGGACGAAATTGACCCC
AGCTTATACCCAGCTGTGGCATACCAAGGGAAAACTTGGGCAGTACCTTTTGCTACAAATAATGTTGGCGTTTTTTATCG
TCCCAGTTTGTTTAAAGCGGCCGGAATTACAAAATTACCCAAGACTTGGGCAGAGTTTCGGGAAGTTGCCAAAAAATTAA
CTCGTGATACCGACGGTGATGGAAGAATTGATCAACATGGGATGGTACTACCTTTAGGCAAAGGTGAGTTTACCGTTTTT
ACTTGGCTACCATTTATGTGGAGTGGCGGCGGCGAGTTGGTAAGTAAAGATTCACAGAATGCGGCTGGTGTCACTTTAGA
AAATAATGCTGGGGCGATCGCTGCTTTGCAATTGTGGCGTGATTTAATTACAGATGGTTCGGCTGTGTTATCAGGCCCAG
AAAGAGGTTATGAAACCAATGATTTGCTAGCTGGGAAAGTGGCGATGCAATTAACTGGGCCTTGGACTTTAGGGGAGTTT
CAAGCCAGTGGGATTGATTTTGATGTATTCCCTATTCCGGTGGGGCAAAGACCTGCTACTGTAATTGGCGGCGAAAATTT
GTATATTTTTAAATCAAGACCAGAAAGAGAAAAAGCGGCTTTTAAATTTCTTGAATATGCGGCTAGTGAAGAATTTCAAA
CAGAGTTAGCACTGGGAACTGGTTATTTACCGATTAATTTAAAATCCCGCGAAAGTTCAAAATACCAGGAATTTGTCAGG
AAAGTACCCCAAGCAAAAGTCTTTTTAGAACAGGCTAAGTATGCGCGATCGCGTCCTACTTTCCCCGGTTATAATCGAAT
TTCTGATAGTGTAGGCCGGGCAGTGGAAACTGTATTGATGGGTAAAAGTTCCCCAGCAGATGCCCTAAAAGCTAGTCAGC
AGAGATTAGATTTGATTTTCAAATAA

Upstream 100 bases:

>100_bases
ATTTACTATGTCCTGCCATAATCTAAAGCTGATAAATCTCTTTTCCAAAGTTAATGGTTAATGGTCAATAGTCATTAGTC
AATAGTCCCTCACTCTGTCC

Downstream 100 bases:

>100_bases
TTAATATCAATTGATTTCCAAGTCATTGTGGTATAAAAAGTAATTGCTATCTTGGCTCTAGGTTAACAAAACTTGAGTAA
AAAAACTCAGGCTTTTTACC

Product: sugar ABC transporter sugar binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 461; Mature: 461

Protein sequence:

>461_residues
MKVKKLINLFYQHCGRFFFASDDSRVKRKNWRFYRYRWLSLFLVGILVTSGCQVIQNGMKADKVIHLTLWHGVNPPPNRD
VFQKLVDKFNQSHKDIQVDAIYAGQQDQQMPKILAAVVGNASPDILWYNPATTGQLVELNALVPLDEMLASSQIKDEIDP
SLYPAVAYQGKTWAVPFATNNVGVFYRPSLFKAAGITKLPKTWAEFREVAKKLTRDTDGDGRIDQHGMVLPLGKGEFTVF
TWLPFMWSGGGELVSKDSQNAAGVTLENNAGAIAALQLWRDLITDGSAVLSGPERGYETNDLLAGKVAMQLTGPWTLGEF
QASGIDFDVFPIPVGQRPATVIGGENLYIFKSRPEREKAAFKFLEYAASEEFQTELALGTGYLPINLKSRESSKYQEFVR
KVPQAKVFLEQAKYARSRPTFPGYNRISDSVGRAVETVLMGKSSPADALKASQQRLDLIFK

Sequences:

>Translated_461_residues
MKVKKLINLFYQHCGRFFFASDDSRVKRKNWRFYRYRWLSLFLVGILVTSGCQVIQNGMKADKVIHLTLWHGVNPPPNRD
VFQKLVDKFNQSHKDIQVDAIYAGQQDQQMPKILAAVVGNASPDILWYNPATTGQLVELNALVPLDEMLASSQIKDEIDP
SLYPAVAYQGKTWAVPFATNNVGVFYRPSLFKAAGITKLPKTWAEFREVAKKLTRDTDGDGRIDQHGMVLPLGKGEFTVF
TWLPFMWSGGGELVSKDSQNAAGVTLENNAGAIAALQLWRDLITDGSAVLSGPERGYETNDLLAGKVAMQLTGPWTLGEF
QASGIDFDVFPIPVGQRPATVIGGENLYIFKSRPEREKAAFKFLEYAASEEFQTELALGTGYLPINLKSRESSKYQEFVR
KVPQAKVFLEQAKYARSRPTFPGYNRISDSVGRAVETVLMGKSSPADALKASQQRLDLIFK
>Mature_461_residues
MKVKKLINLFYQHCGRFFFASDDSRVKRKNWRFYRYRWLSLFLVGILVTSGCQVIQNGMKADKVIHLTLWHGVNPPPNRD
VFQKLVDKFNQSHKDIQVDAIYAGQQDQQMPKILAAVVGNASPDILWYNPATTGQLVELNALVPLDEMLASSQIKDEIDP
SLYPAVAYQGKTWAVPFATNNVGVFYRPSLFKAAGITKLPKTWAEFREVAKKLTRDTDGDGRIDQHGMVLPLGKGEFTVF
TWLPFMWSGGGELVSKDSQNAAGVTLENNAGAIAALQLWRDLITDGSAVLSGPERGYETNDLLAGKVAMQLTGPWTLGEF
QASGIDFDVFPIPVGQRPATVIGGENLYIFKSRPEREKAAFKFLEYAASEEFQTELALGTGYLPINLKSRESSKYQEFVR
KVPQAKVFLEQAKYARSRPTFPGYNRISDSVGRAVETVLMGKSSPADALKASQQRLDLIFK

Specific function: Part of the ABC transporter complex ugpABCE involved in sn-glycerol-3-phosphate import [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=436, Percent_Identity=21.7889908256881, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790466, Length=364, Percent_Identity=23.6263736263736, Blast_Score=67, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 51462; Mature: 51462

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVKKLINLFYQHCGRFFFASDDSRVKRKNWRFYRYRWLSLFLVGILVTSGCQVIQNGMK
CCHHHHHHHHHHHHCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
ADKVIHLTLWHGVNPPPNRDVFQKLVDKFNQSHKDIQVDAIYAGQQDQQMPKILAAVVGN
CCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
ASPDILWYNPATTGQLVELNALVPLDEMLASSQIKDEIDPSLYPAVAYQGKTWAVPFATN
CCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHEEECCCEEEEEEEEC
NVGVFYRPSLFKAAGITKLPKTWAEFREVAKKLTRDTDGDGRIDQHGMVLPLGKGEFTVF
CEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEE
TWLPFMWSGGGELVSKDSQNAAGVTLENNAGAIAALQLWRDLITDGSAVLSGPERGYETN
EEEHHHCCCCCCEECCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCC
DLLAGKVAMQLTGPWTLGEFQASGIDFDVFPIPVGQRPATVIGGENLYIFKSRPEREKAA
CEEECEEEEEEECCEEECCCCCCCCCEEEEECCCCCCCCEEECCCEEEEECCCCCHHHHH
FKFLEYAASEEFQTELALGTGYLPINLKSRESSKYQEFVRKVPQAKVFLEQAKYARSRPT
HHHHHHHHCHHHHHHHEECCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCC
FPGYNRISDSVGRAVETVLMGKSSPADALKASQQRLDLIFK
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKVKKLINLFYQHCGRFFFASDDSRVKRKNWRFYRYRWLSLFLVGILVTSGCQVIQNGMK
CCHHHHHHHHHHHHCCEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCC
ADKVIHLTLWHGVNPPPNRDVFQKLVDKFNQSHKDIQVDAIYAGQQDQQMPKILAAVVGN
CCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHCC
ASPDILWYNPATTGQLVELNALVPLDEMLASSQIKDEIDPSLYPAVAYQGKTWAVPFATN
CCCCEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCHHEEECCCEEEEEEEEC
NVGVFYRPSLFKAAGITKLPKTWAEFREVAKKLTRDTDGDGRIDQHGMVLPLGKGEFTVF
CEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCEEEE
TWLPFMWSGGGELVSKDSQNAAGVTLENNAGAIAALQLWRDLITDGSAVLSGPERGYETN
EEEHHHCCCCCCEECCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCC
DLLAGKVAMQLTGPWTLGEFQASGIDFDVFPIPVGQRPATVIGGENLYIFKSRPEREKAA
CEEECEEEEEEECCEEECCCCCCCCCEEEEECCCCCCCCEEECCCEEEEECCCCCHHHHH
FKFLEYAASEEFQTELALGTGYLPINLKSRESSKYQEFVRKVPQAKVFLEQAKYARSRPT
HHHHHHHHCHHHHHHHEECCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCC
FPGYNRISDSVGRAVETVLMGKSSPADALKASQQRLDLIFK
CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA