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The map label for this gene is yafD [C]

Identifier: 17231714

GI number: 17231714

Start: 5058477

End: 5059322

Strand: Direct

Name: yafD [C]

Synonym: alr4222

Alternate gene names: 17231714

Gene position: 5058477-5059322 (Clockwise)

Preceding gene: 17231708

Following gene: 17231715

Centisome position: 78.87

GC content: 34.75

Gene sequence:

>846_bases
ATGCTAGTTATGCCTGACATCAAAGAACACGCAGTCATTCTTGCTAGACAATTTCTGCCTTATTACAGATTTATGCGTAC
GCAAGAATTAACTATTGATAGTAGTCAGGGATTGCAAACAGAGTTGAACAGCAATTCTATTAAAGTTTTAAATTGGAATA
TTGCTAAAAATAACTTTGAGAAATTTTGGTTTCAAGACTTTTTTAAAATCCTCAGGCTGTACCAACCAGATATCATATTT
CTACAAGAAGTCCGTATGGGCGTGAATGTAGAACAAATTATGGGCTTTACAAATATGAGTTGGGCTTATGCGCCTAATTT
TATCGATGCTCATCATCAAACTTATTCAGGTATTTTGACGGCAGCAAAAATTAGTGCGATCGCTAAAAAAGTTATCGTCA
CTAAACACCATGAGCCTGTGTTCAAAACTCCTAAGGTTTCGCTGATTACTGAATATTCCTTATCTCATCAGCAACAGACA
CTTTTAACTATTAATAGCCATCTAATTAATTTTGTCGATTTAGATAAATTTAAAGCTCAATTACACGAATTAGAGTTAGC
CATATCTACCCATAGGGGTTCGATTCTTTTTGCTGGCGATTTCAATACTTGGAGTCGCAAACGAGCAGTCCTTTTAGAGA
AAACAGTAATTCGATTGGGTTTAAAAGAAGCACATTTTACACCGGAAGAAAATAAAAAGATTAAACGGTTTCTTTTGTCA
CCCCCCCTAGATTATATTTTTTATCGTGGTTTGAGTGAAAAACCAGCAACTGCTAAGGTTTTAGATGAAATTTGTTCATC
CGATCACAAACCTTTACTGGCAGAATTTACTTATATCGATACATAA

Upstream 100 bases:

>100_bases
AGTAAAAATTATTTTAAATTTTAGTGAGTAGGTATGCTGGGTGGAACACCATCACTATCACATAGTATGTAATAAAATTA
AGCTATATCAAGTTTTTTGA

Downstream 100 bases:

>100_bases
TAAATTCAGATGCTGATAGACAGTAGCGTCCTTGCTTTTTTTAGCGCAGCTACAGTTGTTATTCATGGTTTGGGAATTGC
CCATGCTGCCCATGCCGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 281; Mature: 281

Protein sequence:

>281_residues
MLVMPDIKEHAVILARQFLPYYRFMRTQELTIDSSQGLQTELNSNSIKVLNWNIAKNNFEKFWFQDFFKILRLYQPDIIF
LQEVRMGVNVEQIMGFTNMSWAYAPNFIDAHHQTYSGILTAAKISAIAKKVIVTKHHEPVFKTPKVSLITEYSLSHQQQT
LLTINSHLINFVDLDKFKAQLHELELAISTHRGSILFAGDFNTWSRKRAVLLEKTVIRLGLKEAHFTPEENKKIKRFLLS
PPLDYIFYRGLSEKPATAKVLDEICSSDHKPLLAEFTYIDT

Sequences:

>Translated_281_residues
MLVMPDIKEHAVILARQFLPYYRFMRTQELTIDSSQGLQTELNSNSIKVLNWNIAKNNFEKFWFQDFFKILRLYQPDIIF
LQEVRMGVNVEQIMGFTNMSWAYAPNFIDAHHQTYSGILTAAKISAIAKKVIVTKHHEPVFKTPKVSLITEYSLSHQQQT
LLTINSHLINFVDLDKFKAQLHELELAISTHRGSILFAGDFNTWSRKRAVLLEKTVIRLGLKEAHFTPEENKKIKRFLLS
PPLDYIFYRGLSEKPATAKVLDEICSSDHKPLLAEFTYIDT
>Mature_281_residues
MLVMPDIKEHAVILARQFLPYYRFMRTQELTIDSSQGLQTELNSNSIKVLNWNIAKNNFEKFWFQDFFKILRLYQPDIIF
LQEVRMGVNVEQIMGFTNMSWAYAPNFIDAHHQTYSGILTAAKISAIAKKVIVTKHHEPVFKTPKVSLITEYSLSHQQQT
LLTINSHLINFVDLDKFKAQLHELELAISTHRGSILFAGDFNTWSRKRAVLLEKTVIRLGLKEAHFTPEENKKIKRFLLS
PPLDYIFYRGLSEKPATAKVLDEICSSDHKPLLAEFTYIDT

Specific function: Unknown

COG id: COG3021

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0294 family [H]

Homologues:

Organism=Escherichia coli, GI1786403, Length=266, Percent_Identity=28.5714285714286, Blast_Score=105, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005135
- InterPro:   IPR022958 [H]

Pfam domain/function: PF03372 Exo_endo_phos [H]

EC number: NA

Molecular weight: Translated: 32606; Mature: 32606

Theoretical pI: Translated: 9.38; Mature: 9.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVMPDIKEHAVILARQFLPYYRFMRTQELTIDSSQGLQTELNSNSIKVLNWNIAKNNFE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCEEEEEEEECCCCHH
KFWFQDFFKILRLYQPDIIFLQEVRMGVNVEQIMGFTNMSWAYAPNFIDAHHQTYSGILT
HHHHHHHHHHHHHHCCCEEEEEHHHHCCCHHHHHCCCCCCCEECCCHHHHHHHHHHHHHH
AAKISAIAKKVIVTKHHEPVFKTPKVSLITEYSLSHQQQTLLTINSHLINFVDLDKFKAQ
HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCHHHHEEHHHHHHHHHHHHHHHHH
LHELELAISTHRGSILFAGDFNTWSRKRAVLLEKTVIRLGLKEAHFTPEENKKIKRFLLS
HHHHHHEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
PPLDYIFYRGLSEKPATAKVLDEICSSDHKPLLAEFTYIDT
CCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MLVMPDIKEHAVILARQFLPYYRFMRTQELTIDSSQGLQTELNSNSIKVLNWNIAKNNFE
CCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEECCCCCEEEEEEEECCCCHH
KFWFQDFFKILRLYQPDIIFLQEVRMGVNVEQIMGFTNMSWAYAPNFIDAHHQTYSGILT
HHHHHHHHHHHHHHCCCEEEEEHHHHCCCHHHHHCCCCCCCEECCCHHHHHHHHHHHHHH
AAKISAIAKKVIVTKHHEPVFKTPKVSLITEYSLSHQQQTLLTINSHLINFVDLDKFKAQ
HHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECHHCCCHHHHEEHHHHHHHHHHHHHHHHH
LHELELAISTHRGSILFAGDFNTWSRKRAVLLEKTVIRLGLKEAHFTPEENKKIKRFLLS
HHHHHHEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCC
PPLDYIFYRGLSEKPATAKVLDEICSSDHKPLLAEFTYIDT
CCHHHHHHCCCCCCCCHHHHHHHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]