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The map label for this gene is secY [H]

Identifier: 17231689

GI number: 17231689

Start: 5041753

End: 5043066

Strand: Reverse

Name: secY [H]

Synonym: all4197

Alternate gene names: 17231689

Gene position: 5043066-5041753 (Counterclockwise)

Preceding gene: 17231690

Following gene: 17231688

Centisome position: 78.63

GC content: 43.53

Gene sequence:

>1314_bases
ATGATCAGTCGAGATAAAGCCCCAACGGCTCAAGAAACTTTTATGCAGATGGCGCAAGCAGCTGGGCTGAGAGGCAGGCT
GCTTGTAACTGTCGGTATTTTAATCCTGGTTCGCCTGGGTATCTTTTTACCAGTACCAGGAATTGATAGAACTCGTTTTG
CCGAAGCAATTTCGAGCAATAATGCCATATTCGGTTTATTGGATATATTTTCAGGGCGAGGACTTTCAACTTTGGGAGTC
TTTGCTTTAGGGATTTTGCCTTTTATTAATGCGTCAATTATCATCCAATTACTGACTGCGGCAATACCATCTTTAGAAAA
TTTACAGAAAAATGAAGGCGAAGCGGGTCGGCGGAAAATTTCCCAAATTACTCGCTATGTAACTGTAGGGTGGGCAATTT
TTCAGAGCGTGGCTTTCTCCGCTTTATTTCTCCAGCAGTTTGCCTTGCAACCAGGCCCAGTATTTGTAGCAGAAACAGCG
ATCGCACTGACAGCTGGTTCTATGTTCGTTATGTGGGCATCGGAACTGATCACAGAACGCGGTATTGGTAATGGTGCATC
CTTGTTAATTTTTGTCAACATTGTCGCATCCTTGCCAAAATCCTTAGGTGACACCATTGACTTAGTGCAAGTTGGTGGTA
GAGAAATTGTTGGTCGCGTGATTGTGCTAGTGTTAGTATTCCTAGCAACAATCGTGGGCATCGTATTTGTACAGGAAGGC
ATCCGGCGCATCCCAATTATCTCGGCTCGTCGTCAAGTTGGTCGTCGGGTACTCGCAGAACAGCGTAGCTATTTACCCTT
GCGTCTCATATCTGGTGGTGTCATGCCAATCATCTTTGCAGCAGCCATTTTGAGTTTGCCACTTTTGATTGCTAACTTCA
CCAAGAATCCCGAATTGGCTAACATTGTCAATACTTATTTGAGTCCAGGTGGTTCTGGATCTTGGGTATACGCTTTGGTG
TACTTAATTTCCATTGTTTTCTTTAGCTACTTCTATTCTTCTTTGATTGTTAACCCTGTTGACGTAGCTCAGAACCTCAA
GAAAATGGGTTCTAGTATTCCGGGTATTCGTCCTGGAAAGGCAACTAGTGAATACATCGAACGGGTAATTAACAGACTAA
CTTTTTTGGGTGCAATCTTTTTGGGTTTGGTGGCAATTATCCCCACTGCCGTAGAAAGAGCTTTAGGAGTACCAACCTTT
AGGGGATTGGGTGCAACTTCATTGCTAATTCTGGTTGGTGTGGCAATTGAGACAGCTAAACAAGTCCAAACTTACGTTAT
TTCTCAGCGTTATGAAGGAATGGTGAAACAATAG

Upstream 100 bases:

>100_bases
GCTGGAGGGAGTTGTGAAGTTTTAGGGTGATGCCCAACAGCGCACTTGAAAGCTAGCCAATTTGCTTCCAGCGCCTGGTT
CACGATAAAGGTAGCACTCT

Downstream 100 bases:

>100_bases
TGACGCGACTAATCTTCTTGGGGCCGCCGGGAGCAGGTAAAGGAACACAAGCTCAAATTTTGGCTGAACATTTACATATT
CCGCATATTTCCACTGGGGA

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MISRDKAPTAQETFMQMAQAAGLRGRLLVTVGILILVRLGIFLPVPGIDRTRFAEAISSNNAIFGLLDIFSGRGLSTLGV
FALGILPFINASIIIQLLTAAIPSLENLQKNEGEAGRRKISQITRYVTVGWAIFQSVAFSALFLQQFALQPGPVFVAETA
IALTAGSMFVMWASELITERGIGNGASLLIFVNIVASLPKSLGDTIDLVQVGGREIVGRVIVLVLVFLATIVGIVFVQEG
IRRIPIISARRQVGRRVLAEQRSYLPLRLISGGVMPIIFAAAILSLPLLIANFTKNPELANIVNTYLSPGGSGSWVYALV
YLISIVFFSYFYSSLIVNPVDVAQNLKKMGSSIPGIRPGKATSEYIERVINRLTFLGAIFLGLVAIIPTAVERALGVPTF
RGLGATSLLILVGVAIETAKQVQTYVISQRYEGMVKQ

Sequences:

>Translated_437_residues
MISRDKAPTAQETFMQMAQAAGLRGRLLVTVGILILVRLGIFLPVPGIDRTRFAEAISSNNAIFGLLDIFSGRGLSTLGV
FALGILPFINASIIIQLLTAAIPSLENLQKNEGEAGRRKISQITRYVTVGWAIFQSVAFSALFLQQFALQPGPVFVAETA
IALTAGSMFVMWASELITERGIGNGASLLIFVNIVASLPKSLGDTIDLVQVGGREIVGRVIVLVLVFLATIVGIVFVQEG
IRRIPIISARRQVGRRVLAEQRSYLPLRLISGGVMPIIFAAAILSLPLLIANFTKNPELANIVNTYLSPGGSGSWVYALV
YLISIVFFSYFYSSLIVNPVDVAQNLKKMGSSIPGIRPGKATSEYIERVINRLTFLGAIFLGLVAIIPTAVERALGVPTF
RGLGATSLLILVGVAIETAKQVQTYVISQRYEGMVKQ
>Mature_437_residues
MISRDKAPTAQETFMQMAQAAGLRGRLLVTVGILILVRLGIFLPVPGIDRTRFAEAISSNNAIFGLLDIFSGRGLSTLGV
FALGILPFINASIIIQLLTAAIPSLENLQKNEGEAGRRKISQITRYVTVGWAIFQSVAFSALFLQQFALQPGPVFVAETA
IALTAGSMFVMWASELITERGIGNGASLLIFVNIVASLPKSLGDTIDLVQVGGREIVGRVIVLVLVFLATIVGIVFVQEG
IRRIPIISARRQVGRRVLAEQRSYLPLRLISGGVMPIIFAAAILSLPLLIANFTKNPELANIVNTYLSPGGSGSWVYALV
YLISIVFFSYFYSSLIVNPVDVAQNLKKMGSSIPGIRPGKATSEYIERVINRLTFLGAIFLGLVAIIPTAVERALGVPTF
RGLGATSLLILVGVAIETAKQVQTYVISQRYEGMVKQ

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=424, Percent_Identity=43.6320754716981, Blast_Score=287, Evalue=1e-78,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 47063; Mature: 47063

Theoretical pI: Translated: 10.72; Mature: 10.72

Prosite motif: PS00755 SECY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISRDKAPTAQETFMQMAQAAGLRGRLLVTVGILILVRLGIFLPVPGIDRTRFAEAISSN
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
NAIFGLLDIFSGRGLSTLGVFALGILPFINASIIIQLLTAAIPSLENLQKNEGEAGRRKI
CCEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHH
SQITRYVTVGWAIFQSVAFSALFLQQFALQPGPVFVAETAIALTAGSMFVMWASELITER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHC
GIGNGASLLIFVNIVASLPKSLGDTIDLVQVGGREIVGRVIVLVLVFLATIVGIVFVQEG
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRRIPIISARRQVGRRVLAEQRSYLPLRLISGGVMPIIFAAAILSLPLLIANFTKNPELA
HHHCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
NIVNTYLSPGGSGSWVYALVYLISIVFFSYFYSSLIVNPVDVAQNLKKMGSSIPGIRPGK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
ATSEYIERVINRLTFLGAIFLGLVAIIPTAVERALGVPTFRGLGATSLLILVGVAIETAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
QVQTYVISQRYEGMVKQ
HHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MISRDKAPTAQETFMQMAQAAGLRGRLLVTVGILILVRLGIFLPVPGIDRTRFAEAISSN
CCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCC
NAIFGLLDIFSGRGLSTLGVFALGILPFINASIIIQLLTAAIPSLENLQKNEGEAGRRKI
CCEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHH
SQITRYVTVGWAIFQSVAFSALFLQQFALQPGPVFVAETAIALTAGSMFVMWASELITER
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHC
GIGNGASLLIFVNIVASLPKSLGDTIDLVQVGGREIVGRVIVLVLVFLATIVGIVFVQEG
CCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRRIPIISARRQVGRRVLAEQRSYLPLRLISGGVMPIIFAAAILSLPLLIANFTKNPELA
HHHCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHH
NIVNTYLSPGGSGSWVYALVYLISIVFFSYFYSSLIVNPVDVAQNLKKMGSSIPGIRPGK
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCC
ATSEYIERVINRLTFLGAIFLGLVAIIPTAVERALGVPTFRGLGATSLLILVGVAIETAK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH
QVQTYVISQRYEGMVKQ
HHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1420358 [H]