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The map label for this gene is yhdY [H]

Identifier: 17231658

GI number: 17231658

Start: 5012632

End: 5013777

Strand: Direct

Name: yhdY [H]

Synonym: alr4166

Alternate gene names: 17231658

Gene position: 5012632-5013777 (Clockwise)

Preceding gene: 17231657

Following gene: 17231659

Centisome position: 78.15

GC content: 41.36

Gene sequence:

>1146_bases
ATGACTAAACTAACTTGGTTACGCAAAAATCTATTTAGTACTTGGTATAACAGCCTATTAACTGTTATCTGCTCGGCGTT
ATCGTTGTGGCTAGTACAAGGGATTATTGTTTGGGCAACTACCAAAGCACAATGGGCAGTTATTCAAGTAAATTTACGCT
TATTTTTAGTGGGCAGATTTCCCCAAACTGAATACTGGCGAGTTTGGATTGTTTTAGCGATCGCTTCTACTTTAGGTGCT
GTTACTGCGGGTATTTTCTTTAATCAGCAAAAATTGACATGGCGTAAAGTAGGCTTATTTGCTTTTATTGTCGGCTTGCT
ACTAATTCTTTTCACCTTAGATTTGTCATCGCGCCTGTGGTTGCTGTTAACTGCGGTTTTATTGATACCTGGTTTTTTAC
TTGGATCAAGGTTGACAAATTTAGTCGCCCCGTGGCTTTCCTTGATCTGGTTATTGTCCTTCCCCATCATTCTGTGGTTG
ATTGGTGGCGGCTTCGGTTTGCGTCCCGTATCCAGCAATTTATGGAACGGTTTGCTACTCACCTTATTGATGGCAGCAAT
TAGTATAGTTCTTTCTTTTCCTATTGGCGTTCTACTCGCCTTGGGACGTACTAGCAATTTGCCGGTAGTACGTTGGTTTT
CTATTCTTTACATTGAGATTGTTCGGGGAGTTCCATTAATTGGAATTTTATTTCTCGCGCAAGTTATGTTGCCTTTGTTT
TTCGCAGCCGATGTCCGTTTAGATCGAGTGTTGAGAGCGATCGCTGGCTTGGTACTATTTAGTGCAGCTTACATGGCTGA
GAATGTGCGCGGTGGTCTTCAAGCCGTCTCCCGTGGACAAGTTGAAGCCGCAAAAGCACTAGGGTTAAATACATTTTTCG
TAGTATTGTTAATTGTCTTGCCCCAAGCCTTACGCGCAGTTATTCCCGCTCTTGTCGGACAATTTATTGGTTTATTTAAA
GACACTTCTCTACTATCGCTTGTAGGCTTAGTAGAACTTACAGGTATAGCCCGTTCGATTTTGGCACAACCTCAGTTTAT
TGGTCGTTATGCAGAAGTATATTTATTTATTGGCTTGATTTATTGGCTATTTTGTTACTCAATGTCCCTTGCTTCCCGGC
GGTTAGAGAGACAACTAAATAATTAA

Upstream 100 bases:

>100_bases
AGTTTGACTATCTCCCTCATCATGAATGCCTTTAATCGCACCGTACAGATTAAAGAAAGGTAATGGAGACCGGGAGAAAA
TTACCTTTGACTAATTACCA

Downstream 100 bases:

>100_bases
GTGAACTTAAGGTTAATGTATATGGCAGAACCAACATCAATAATTATTGCTGAAGATGTTCACAAATGGTATGGCAAATT
CCATGTCCTCCAAGGTGTTA

Product: permease protein of amino acid ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MTKLTWLRKNLFSTWYNSLLTVICSALSLWLVQGIIVWATTKAQWAVIQVNLRLFLVGRFPQTEYWRVWIVLAIASTLGA
VTAGIFFNQQKLTWRKVGLFAFIVGLLLILFTLDLSSRLWLLLTAVLLIPGFLLGSRLTNLVAPWLSLIWLLSFPIILWL
IGGGFGLRPVSSNLWNGLLLTLLMAAISIVLSFPIGVLLALGRTSNLPVVRWFSILYIEIVRGVPLIGILFLAQVMLPLF
FAADVRLDRVLRAIAGLVLFSAAYMAENVRGGLQAVSRGQVEAAKALGLNTFFVVLLIVLPQALRAVIPALVGQFIGLFK
DTSLLSLVGLVELTGIARSILAQPQFIGRYAEVYLFIGLIYWLFCYSMSLASRRLERQLNN

Sequences:

>Translated_381_residues
MTKLTWLRKNLFSTWYNSLLTVICSALSLWLVQGIIVWATTKAQWAVIQVNLRLFLVGRFPQTEYWRVWIVLAIASTLGA
VTAGIFFNQQKLTWRKVGLFAFIVGLLLILFTLDLSSRLWLLLTAVLLIPGFLLGSRLTNLVAPWLSLIWLLSFPIILWL
IGGGFGLRPVSSNLWNGLLLTLLMAAISIVLSFPIGVLLALGRTSNLPVVRWFSILYIEIVRGVPLIGILFLAQVMLPLF
FAADVRLDRVLRAIAGLVLFSAAYMAENVRGGLQAVSRGQVEAAKALGLNTFFVVLLIVLPQALRAVIPALVGQFIGLFK
DTSLLSLVGLVELTGIARSILAQPQFIGRYAEVYLFIGLIYWLFCYSMSLASRRLERQLNN
>Mature_380_residues
TKLTWLRKNLFSTWYNSLLTVICSALSLWLVQGIIVWATTKAQWAVIQVNLRLFLVGRFPQTEYWRVWIVLAIASTLGAV
TAGIFFNQQKLTWRKVGLFAFIVGLLLILFTLDLSSRLWLLLTAVLLIPGFLLGSRLTNLVAPWLSLIWLLSFPIILWLI
GGGFGLRPVSSNLWNGLLLTLLMAAISIVLSFPIGVLLALGRTSNLPVVRWFSILYIEIVRGVPLIGILFLAQVMLPLFF
AADVRLDRVLRAIAGLVLFSAAYMAENVRGGLQAVSRGQVEAAKALGLNTFFVVLLIVLPQALRAVIPALVGQFIGLFKD
TSLLSLVGLVELTGIARSILAQPQFIGRYAEVYLFIGLIYWLFCYSMSLASRRLERQLNN

Specific function: Probably part of the binding-protein-dependent transport system ydhWXYZ for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI87082239, Length=382, Percent_Identity=38.7434554973822, Blast_Score=240, Evalue=1e-64,
Organism=Escherichia coli, GI1786873, Length=215, Percent_Identity=34.4186046511628, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1788226, Length=191, Percent_Identity=38.7434554973822, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1787030, Length=212, Percent_Identity=31.1320754716981, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1786874, Length=216, Percent_Identity=27.3148148148148, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI48994930, Length=125, Percent_Identity=34.4, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI1788645, Length=180, Percent_Identity=30.5555555555556, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787087, Length=224, Percent_Identity=27.6785714285714, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1788646, Length=213, Percent_Identity=28.169014084507, Blast_Score=62, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 42421; Mature: 42290

Theoretical pI: Translated: 11.43; Mature: 11.43

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKLTWLRKNLFSTWYNSLLTVICSALSLWLVQGIIVWATTKAQWAVIQVNLRLFLVGRF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEEEEEEECC
PQTEYWRVWIVLAIASTLGAVTAGIFFNQQKLTWRKVGLFAFIVGLLLILFTLDLSSRLW
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLTAVLLIPGFLLGSRLTNLVAPWLSLIWLLSFPIILWLIGGGFGLRPVSSNLWNGLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
TLLMAAISIVLSFPIGVLLALGRTSNLPVVRWFSILYIEIVRGVPLIGILFLAQVMLPLF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
FAADVRLDRVLRAIAGLVLFSAAYMAENVRGGLQAVSRGQVEAAKALGLNTFFVVLLIVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHH
PQALRAVIPALVGQFIGLFKDTSLLSLVGLVELTGIARSILAQPQFIGRYAEVYLFIGLI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
YWLFCYSMSLASRRLERQLNN
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKLTWLRKNLFSTWYNSLLTVICSALSLWLVQGIIVWATTKAQWAVIQVNLRLFLVGRF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEEEEEEECC
PQTEYWRVWIVLAIASTLGAVTAGIFFNQQKLTWRKVGLFAFIVGLLLILFTLDLSSRLW
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLTAVLLIPGFLLGSRLTNLVAPWLSLIWLLSFPIILWLIGGGFGLRPVSSNLWNGLLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
TLLMAAISIVLSFPIGVLLALGRTSNLPVVRWFSILYIEIVRGVPLIGILFLAQVMLPLF
HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
FAADVRLDRVLRAIAGLVLFSAAYMAENVRGGLQAVSRGQVEAAKALGLNTFFVVLLIVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHHHHHH
PQALRAVIPALVGQFIGLFKDTSLLSLVGLVELTGIARSILAQPQFIGRYAEVYLFIGLI
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
YWLFCYSMSLASRRLERQLNN
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]