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The map label for this gene is ygcF [C]

Identifier: 17231653

GI number: 17231653

Start: 5007627

End: 5008421

Strand: Direct

Name: ygcF [C]

Synonym: alr4161

Alternate gene names: 17231653

Gene position: 5007627-5008421 (Clockwise)

Preceding gene: 17231650

Following gene: 17231656

Centisome position: 78.08

GC content: 46.04

Gene sequence:

>795_bases
ATGACTGCTAAAACTACAGCCGAACCTACTGCTCGCCTGGTTGAGGTCTTTTCTGCTATTCAAGGGGAAGGACTGAATGT
CGGGACACGTCAAATTTTTATTCGCTTTGCTTTTTGTGACTTGCGCTGTCACTTTTGCGATAGCGCCCACACATGGAATG
CACCTGCTAGTTGTAGGATAGAACGATCGCCAGGACTGCGAGATTTTGAAAGTCACCCAAATCCTGTCCCTCTAACCACT
CTCATCGAATGGGTTGAAAGGCAAAACTTACCTTGTCTACACGATAGCATTAGCTTAACCGGTGGAGAGCCACTTCTTCA
TGCTCCTTTTTTACAGGAATTTTTGCCCAAAGTGCGATCGCTCACTGGTTTACCTATATACCTAGAGACAGGCGGACATC
GCCCAGAACAATTGGCTACGATTTTACCCTATCTAGACTCTGTGGGTATGGATTTGAAGCTCCCTAGTGTCAGTGGTGAA
TCTCATTGGCAAGCGCATTCCCAATTCCTTCAACTTTGCCTTACACAATCAGAGACTTTTGTCAAGATAATTATCTCTCA
TCGCACAAACTTAGCTGAATTGGAACGCGCGGCTTTACTTGTGGCAGATGTCAGTCCTGAAATCCCTGTATTTTTGCAGC
CTGTCACGCCTTTGGCCGAATCTGAGCAATTCAGCCCAACACCCGCACTTGCTCCTGCTCCAGCAGATGTTTTGACGTGG
CAAGCTTCGATGAAACGGTTTTTAAAATACGTTCGCGTCGTGCCGCAGACTCATAAAATGTTAAATCAGTTATGA

Upstream 100 bases:

>100_bases
GGATCAGATTAGAGATTGACTACAAAGATTCACAATAGAACAAGAAGCTAAAAAACATACTTGTTGTTGCATCGACGTAG
CGCGATCGCATATTACACCC

Downstream 100 bases:

>100_bases
GCAGTAAACCAACAAATTTCTGTAAATTTCTCTGATGAAATTAAAAACTTTGTAAGGGCAAGGCCATATAGTGTTTTTTC
GTTGTCTACAATACACTCTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTAKTTAEPTARLVEVFSAIQGEGLNVGTRQIFIRFAFCDLRCHFCDSAHTWNAPASCRIERSPGLRDFESHPNPVPLTT
LIEWVERQNLPCLHDSISLTGGEPLLHAPFLQEFLPKVRSLTGLPIYLETGGHRPEQLATILPYLDSVGMDLKLPSVSGE
SHWQAHSQFLQLCLTQSETFVKIIISHRTNLAELERAALLVADVSPEIPVFLQPVTPLAESEQFSPTPALAPAPADVLTW
QASMKRFLKYVRVVPQTHKMLNQL

Sequences:

>Translated_264_residues
MTAKTTAEPTARLVEVFSAIQGEGLNVGTRQIFIRFAFCDLRCHFCDSAHTWNAPASCRIERSPGLRDFESHPNPVPLTT
LIEWVERQNLPCLHDSISLTGGEPLLHAPFLQEFLPKVRSLTGLPIYLETGGHRPEQLATILPYLDSVGMDLKLPSVSGE
SHWQAHSQFLQLCLTQSETFVKIIISHRTNLAELERAALLVADVSPEIPVFLQPVTPLAESEQFSPTPALAPAPADVLTW
QASMKRFLKYVRVVPQTHKMLNQL
>Mature_263_residues
TAKTTAEPTARLVEVFSAIQGEGLNVGTRQIFIRFAFCDLRCHFCDSAHTWNAPASCRIERSPGLRDFESHPNPVPLTTL
IEWVERQNLPCLHDSISLTGGEPLLHAPFLQEFLPKVRSLTGLPIYLETGGHRPEQLATILPYLDSVGMDLKLPSVSGES
HWQAHSQFLQLCLTQSETFVKIIISHRTNLAELERAALLVADVSPEIPVFLQPVTPLAESEQFSPTPALAPAPADVLTWQ
ASMKRFLKYVRVVPQTHKMLNQL

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 29421; Mature: 29290

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAKTTAEPTARLVEVFSAIQGEGLNVGTRQIFIRFAFCDLRCHFCDSAHTWNAPASCRI
CCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHEEEEEHHHHHHHEECCCCCCCCCCCCEEE
ERSPGLRDFESHPNPVPLTTLIEWVERQNLPCLHDSISLTGGEPLLHAPFLQEFLPKVRS
ECCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHH
LTGLPIYLETGGHRPEQLATILPYLDSVGMDLKLPSVSGESHWQAHSQFLQLCLTQSETF
HCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCHH
VKIIISHRTNLAELERAALLVADVSPEIPVFLQPVTPLAESEQFSPTPALAPAPADVLTW
HHHHHHCCCCHHHHHHHHEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
QASMKRFLKYVRVVPQTHKMLNQL
HHHHHHHHHHHHHCCHHHHHHHCC
>Mature Secondary Structure 
TAKTTAEPTARLVEVFSAIQGEGLNVGTRQIFIRFAFCDLRCHFCDSAHTWNAPASCRI
CCCCCCCHHHHHHHHHHHHCCCCCCCCHHHEEEEEHHHHHHHEECCCCCCCCCCCCEEE
ERSPGLRDFESHPNPVPLTTLIEWVERQNLPCLHDSISLTGGEPLLHAPFLQEFLPKVRS
ECCCCCCCHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHH
LTGLPIYLETGGHRPEQLATILPYLDSVGMDLKLPSVSGESHWQAHSQFLQLCLTQSETF
HCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHCCCCHH
VKIIISHRTNLAELERAALLVADVSPEIPVFLQPVTPLAESEQFSPTPALAPAPADVLTW
HHHHHHCCCCHHHHHHHHEEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHH
QASMKRFLKYVRVVPQTHKMLNQL
HHHHHHHHHHHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]