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The map label for this gene is pcb [H]

Identifier: 17231492

GI number: 17231492

Start: 4817699

End: 4818661

Strand: Reverse

Name: pcb [H]

Synonym: all4000

Alternate gene names: 17231492

Gene position: 4818661-4817699 (Counterclockwise)

Preceding gene: 17231493

Following gene: 17231491

Centisome position: 75.13

GC content: 40.19

Gene sequence:

>963_bases
GTGGCAATTTCTACTGATAGAACTTTTGCAGCAAACACACAATTACCTTGGTTAATTGGTAATGCTCGTTTGACTGATTT
ATCTGGTCAATTATTAGGCGCACATATTGCCCATGCCGGCTTAATTATGTTTTGGGCAGGAACAACTACCATCTCAGAAG
TCCTTCGCTTTGTTCCTGACGTTCCCATGTATGAGCAAGGTTTAATTTTATTACCACACCTAGCAACCTTAGGTTGGGGA
GTAGGTGTTGGTGGTCAAGTAATTGATACCTATCCCTATTTCGTCATTGGTGTACTGCATTTAATTGCCTCTGCGGTATT
GGGTGCAGGCGGACTATTTCATGTATTTCGCACTCCAGCAATTTTATACAATAACGGTGGGAGAACGGCGCAATTTCATT
ATGAATGGAATGACCCTAAACAATTGAGTTTGATTTTAGGACATCACCTAATTATTCTGGGTTTAGGAGCATTCTTACTA
GTGCTAAAAGCCATGTTTTTTGGCGGCATTTATGACACTAATTTGGGAGATGTACGCTCGATTACTAACCCTACTCTTAA
CCCAGGCATAATTTTCGGTTATTTAGTCGGGTTAAAAGATCATACTTGGCATCCTTTAGGAATAGCAACTGTAGACAATC
TAGAGGATGTCATTGGTGGTCATATTTGGATTGGCGGCATTTTAATTTTTGGCGGTATCTGGCATATTATCGTACAGCCA
TTTGCTTGGGTGAGAAGAATTTTACCAATAGAAAATGGCGAAGAAATTTTGGCTTACAGTTTACTGGGTTTAGCCTTGAT
GGCTTGGATTTCTGCCAGCTTTGTGGGATACAATACTACAGTTTTTCCGACGGAATTTTACGGTTCGGAACGTTTATTTG
CTGCCAATATTCAATTTTTTCTAGGGATATTAGCTTTCTTGGGTTATGTTTGGCACGCTTGGAGAGGGCGTAACATTTCC
TAA

Upstream 100 bases:

>100_bases
TCAGTTGTCAGTTTCGGTCTCGCTCTCTGAGTGATAAGGATGAGGTCAGTGTGCTGAGTCTATACATAACTCAGCACTTT
TCTAGAGAGGATAGATAACA

Downstream 100 bases:

>100_bases
TCACTAGCTTTTCTCAAGTTCCTTTCCCTGCCTACGGTTAAAGGTAGTTTACTGTAGGCAATTTCCTAAATTTTTTTGTG
GAGTAACAAATAGTGATGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MAISTDRTFAANTQLPWLIGNARLTDLSGQLLGAHIAHAGLIMFWAGTTTISEVLRFVPDVPMYEQGLILLPHLATLGWG
VGVGGQVIDTYPYFVIGVLHLIASAVLGAGGLFHVFRTPAILYNNGGRTAQFHYEWNDPKQLSLILGHHLIILGLGAFLL
VLKAMFFGGIYDTNLGDVRSITNPTLNPGIIFGYLVGLKDHTWHPLGIATVDNLEDVIGGHIWIGGILIFGGIWHIIVQP
FAWVRRILPIENGEEILAYSLLGLALMAWISASFVGYNTTVFPTEFYGSERLFAANIQFFLGILAFLGYVWHAWRGRNIS

Sequences:

>Translated_320_residues
MAISTDRTFAANTQLPWLIGNARLTDLSGQLLGAHIAHAGLIMFWAGTTTISEVLRFVPDVPMYEQGLILLPHLATLGWG
VGVGGQVIDTYPYFVIGVLHLIASAVLGAGGLFHVFRTPAILYNNGGRTAQFHYEWNDPKQLSLILGHHLIILGLGAFLL
VLKAMFFGGIYDTNLGDVRSITNPTLNPGIIFGYLVGLKDHTWHPLGIATVDNLEDVIGGHIWIGGILIFGGIWHIIVQP
FAWVRRILPIENGEEILAYSLLGLALMAWISASFVGYNTTVFPTEFYGSERLFAANIQFFLGILAFLGYVWHAWRGRNIS
>Mature_319_residues
AISTDRTFAANTQLPWLIGNARLTDLSGQLLGAHIAHAGLIMFWAGTTTISEVLRFVPDVPMYEQGLILLPHLATLGWGV
GVGGQVIDTYPYFVIGVLHLIASAVLGAGGLFHVFRTPAILYNNGGRTAQFHYEWNDPKQLSLILGHHLIILGLGAFLLV
LKAMFFGGIYDTNLGDVRSITNPTLNPGIIFGYLVGLKDHTWHPLGIATVDNLEDVIGGHIWIGGILIFGGIWHIIVQPF
AWVRRILPIENGEEILAYSLLGLALMAWISASFVGYNTTVFPTEFYGSERLFAANIQFFLGILAFLGYVWHAWRGRNIS

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The pcb genes are not related to the higher plant LHCs [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000932 [H]

Pfam domain/function: PF00421 PSII [H]

EC number: NA

Molecular weight: Translated: 35135; Mature: 35004

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAISTDRTFAANTQLPWLIGNARLTDLSGQLLGAHIAHAGLIMFWAGTTTISEVLRFVPD
CCCCCCCCEECCCCCCEEECCCEEECCCHHHHHHHHHHHCEEEEECCHHHHHHHHHHCCC
VPMYEQGLILLPHLATLGWGVGVGGQVIDTYPYFVIGVLHLIASAVLGAGGLFHVFRTPA
CCCCCCCCEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCE
ILYNNGGRTAQFHYEWNDPKQLSLILGHHLIILGLGAFLLVLKAMFFGGIYDTNLGDVRS
EEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
ITNPTLNPGIIFGYLVGLKDHTWHPLGIATVDNLEDVIGGHIWIGGILIFGGIWHIIVQP
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
FAWVRRILPIENGEEILAYSLLGLALMAWISASFVGYNTTVFPTEFYGSERLFAANIQFF
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHCCCCCEEEHHHHHH
LGILAFLGYVWHAWRGRNIS
HHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
AISTDRTFAANTQLPWLIGNARLTDLSGQLLGAHIAHAGLIMFWAGTTTISEVLRFVPD
CCCCCCCEECCCCCCEEECCCEEECCCHHHHHHHHHHHCEEEEECCHHHHHHHHHHCCC
VPMYEQGLILLPHLATLGWGVGVGGQVIDTYPYFVIGVLHLIASAVLGAGGLFHVFRTPA
CCCCCCCCEEECHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCE
ILYNNGGRTAQFHYEWNDPKQLSLILGHHLIILGLGAFLLVLKAMFFGGIYDTNLGDVRS
EEECCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH
ITNPTLNPGIIFGYLVGLKDHTWHPLGIATVDNLEDVIGGHIWIGGILIFGGIWHIIVQP
CCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
FAWVRRILPIENGEEILAYSLLGLALMAWISASFVGYNTTVFPTEFYGSERLFAANIQFF
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHCCCCCEEEHHHHHH
LGILAFLGYVWHAWRGRNIS
HHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11287157 [H]