Click here to switch to the map view.

The map label for this gene is xynX [H]

Identifier: 17231475

GI number: 17231475

Start: 4797184

End: 4798386

Strand: Reverse

Name: xynX [H]

Synonym: all3983

Alternate gene names: 17231475

Gene position: 4798386-4797184 (Counterclockwise)

Preceding gene: 17231476

Following gene: 17231473

Centisome position: 74.81

GC content: 46.55

Gene sequence:

>1203_bases
ATGGCTTTGAGCATCACAGCAGGAACTGTGGCACCTTTTTTAGTAGTATCTCCATCTTTTGCTCAAACTACTTTTTCTGA
TGTTTCCTCGAACTACTGGGCTGCACAGTTTATTCAACAATTGTCACAGCGAGGCATCATTGCTGGTTTCCCTGATGGTT
CATTCCGTCCAGAAGAACCAGTAACTCGCGCTCAATTTGCGGCGATGGTCAATAAAGCTTTCCAAAAAGCACCAGAACGG
CAAGCAATTAATTTTGTTGATGTCCCCAGTAACTATTGGGCATCTAGCGCCATTCGGCAAGCTTATACCATCGGTTTCCT
CTCAGGATACCCTGGCAATCGTTTTGAGCCTAACCAAGCTATTCCCCGCCAGCAGGTTTTGGTTTCCCTGGCGAACGGTC
TGGAATATATTCCCAGTGGTAACGTTGACAGTACTCTGCAATACTTTAACGACGCTGTTAACATTGCCGGCTATGCTCGT
AGTCCCATAGCCGCCGCCACTGAGCAGAAAATTGTGGTGAATTATCCCAACGTCAACTTTTTAAATCCCACAGCAACAGC
TACAAGGGCGCAGGTAGCAGCTTTTATCTACCAAGCATTAGTTAGTTCTAATCAAGCCTCAGCACTCACCTCACCCTATA
TTGTGGCTACTCAAGCTAATATTCCCAGAACACCTACTGCTGTCACCATTCCTCAAGGGACTGTGATTCCTGTGAAGTAC
GACAAGGCAGAGAAAATCCTCGTAACAAAGGATGAAACTGCTCCTTTGACCCTTACTGTAGACGAAAACGTAGTTACTCA
AGCGGGTACTGTGGTAATTCCGGCTGGTAGCCAGGTAGTCGGGGAACTGAAGCCAGTTCAAGGCGGTTCCCAATTCGTGG
CTCAAAAACTCGTTTTAACTACAGGTCAAGAGTATCAACTGAATGCAACTTCAGAAGTCATTAACAAAACCGAAACCGTC
AGAAAGGGTGCTAGCACCGGCACAATTATTAAGAATACCGTCCTGGGTGCAAGTGCCGCCGCCGCCGTCTCTGCTGTCAC
AGGCGATCGCGCGATCGCTACTGAAGAAGTTTTAGGCGGTGCGGCCATTGGTGGATTAATCAGCTTGTTTTTCGGCAGAA
ATAGTGTTGACTTAATCGCTATCGACCCAGACACCGATTTACAAATGACCATTAACCAAAATCTACTGGTTTCATTAAGA
TAG

Upstream 100 bases:

>100_bases
TAATACGGTCTAAATAATTAACAAGACGAATAAATAATTGAGTAGGTCAAGAAAGTCTATGTTTAATTTAACTCGTTGGC
AATCTGGTACATCTGCGCTC

Downstream 100 bases:

>100_bases
TCAACCCCTGCTGGTAATTCCCAATTAATAACAACACTAATTTATTAATTACGAATTACTTTGACTCATCGGTAACCAAA
TAATAAACGTCGTTCCTGGT

Product: hypothetical protein

Products: NA

Alternate protein names: 1,4-beta-cellobiohydrolase; Exocellobiohydrolase [H]

Number of amino acids: Translated: 400; Mature: 399

Protein sequence:

>400_residues
MALSITAGTVAPFLVVSPSFAQTTFSDVSSNYWAAQFIQQLSQRGIIAGFPDGSFRPEEPVTRAQFAAMVNKAFQKAPER
QAINFVDVPSNYWASSAIRQAYTIGFLSGYPGNRFEPNQAIPRQQVLVSLANGLEYIPSGNVDSTLQYFNDAVNIAGYAR
SPIAAATEQKIVVNYPNVNFLNPTATATRAQVAAFIYQALVSSNQASALTSPYIVATQANIPRTPTAVTIPQGTVIPVKY
DKAEKILVTKDETAPLTLTVDENVVTQAGTVVIPAGSQVVGELKPVQGGSQFVAQKLVLTTGQEYQLNATSEVINKTETV
RKGASTGTIIKNTVLGASAAAAVSAVTGDRAIATEEVLGGAAIGGLISLFFGRNSVDLIAIDPDTDLQMTINQNLLVSLR

Sequences:

>Translated_400_residues
MALSITAGTVAPFLVVSPSFAQTTFSDVSSNYWAAQFIQQLSQRGIIAGFPDGSFRPEEPVTRAQFAAMVNKAFQKAPER
QAINFVDVPSNYWASSAIRQAYTIGFLSGYPGNRFEPNQAIPRQQVLVSLANGLEYIPSGNVDSTLQYFNDAVNIAGYAR
SPIAAATEQKIVVNYPNVNFLNPTATATRAQVAAFIYQALVSSNQASALTSPYIVATQANIPRTPTAVTIPQGTVIPVKY
DKAEKILVTKDETAPLTLTVDENVVTQAGTVVIPAGSQVVGELKPVQGGSQFVAQKLVLTTGQEYQLNATSEVINKTETV
RKGASTGTIIKNTVLGASAAAAVSAVTGDRAIATEEVLGGAAIGGLISLFFGRNSVDLIAIDPDTDLQMTINQNLLVSLR
>Mature_399_residues
ALSITAGTVAPFLVVSPSFAQTTFSDVSSNYWAAQFIQQLSQRGIIAGFPDGSFRPEEPVTRAQFAAMVNKAFQKAPERQ
AINFVDVPSNYWASSAIRQAYTIGFLSGYPGNRFEPNQAIPRQQVLVSLANGLEYIPSGNVDSTLQYFNDAVNIAGYARS
PIAAATEQKIVVNYPNVNFLNPTATATRAQVAAFIYQALVSSNQASALTSPYIVATQANIPRTPTAVTIPQGTVIPVKYD
KAEKILVTKDETAPLTLTVDENVVTQAGTVVIPAGSQVVGELKPVQGGSQFVAQKLVLTTGQEYQLNATSEVINKTETVR
KGASTGTIIKNTVLGASAAAAVSAVTGDRAIATEEVLGGAAIGGLISLFFGRNSVDLIAIDPDTDLQMTINQNLLVSLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 3 SLH (S-layer homology) domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010502
- InterPro:   IPR008960
- InterPro:   IPR015922
- InterPro:   IPR003305
- InterPro:   IPR008979
- InterPro:   IPR001000
- InterPro:   IPR018087
- InterPro:   IPR017853
- InterPro:   IPR013781
- InterPro:   IPR001119 [H]

Pfam domain/function: PF02018 CBM_4_9; PF06452 DUF1083; PF00331 Glyco_hydro_10; PF00395 SLH [H]

EC number: =3.2.1.91 [H]

Molecular weight: Translated: 42351; Mature: 42220

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: PS01072 SLH_DOMAIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSITAGTVAPFLVVSPSFAQTTFSDVSSNYWAAQFIQQLSQRGIIAGFPDGSFRPEEP
CEEEEECCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCC
VTRAQFAAMVNKAFQKAPERQAINFVDVPSNYWASSAIRQAYTIGFLSGYPGNRFEPNQA
HHHHHHHHHHHHHHHHCCHHHCCEEEECCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCC
IPRQQVLVSLANGLEYIPSGNVDSTLQYFNDAVNIAGYARSPIAAATEQKIVVNYPNVNF
CCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEE
LNPTATATRAQVAAFIYQALVSSNQASALTSPYIVATQANIPRTPTAVTIPQGTVIPVKY
ECCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCEEEEEECCCCCCCCEEECCCCCEEEEEE
DKAEKILVTKDETAPLTLTVDENVVTQAGTVVIPAGSQVVGELKPVQGGSQFVAQKLVLT
CCCCEEEEECCCCCCEEEEECCCEEECCCEEEEECCCHHHHCCCCCCCCHHHHHHHHHHC
TGQEYQLNATSEVINKTETVRKGASTGTIIKNTVLGASAAAAVSAVTGDRAIATEEVLGG
CCCCEEECCHHHHHHHHHHHHCCCCCCCEEHHHHCCCHHHHHHHHHCCCCHHHHHHHHCH
AAIGGLISLFFGRNSVDLIAIDPDTDLQMTINQNLLVSLR
HHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCEEEEEC
>Mature Secondary Structure 
ALSITAGTVAPFLVVSPSFAQTTFSDVSSNYWAAQFIQQLSQRGIIAGFPDGSFRPEEP
EEEEECCCCCCEEEECCCHHHHHHHHHCCCHHHHHHHHHHHHCCCEEECCCCCCCCCCC
VTRAQFAAMVNKAFQKAPERQAINFVDVPSNYWASSAIRQAYTIGFLSGYPGNRFEPNQA
HHHHHHHHHHHHHHHHCCHHHCCEEEECCCCHHHHHHHHHHHEEEEEECCCCCCCCCCCC
IPRQQVLVSLANGLEYIPSGNVDSTLQYFNDAVNIAGYARSPIAAATEQKIVVNYPNVNF
CCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEE
LNPTATATRAQVAAFIYQALVSSNQASALTSPYIVATQANIPRTPTAVTIPQGTVIPVKY
ECCCCHHHHHHHHHHHHHHHHCCCCCHHCCCCEEEEEECCCCCCCCEEECCCCCEEEEEE
DKAEKILVTKDETAPLTLTVDENVVTQAGTVVIPAGSQVVGELKPVQGGSQFVAQKLVLT
CCCCEEEEECCCCCCEEEEECCCEEECCCEEEEECCCHHHHCCCCCCCCHHHHHHHHHHC
TGQEYQLNATSEVINKTETVRKGASTGTIIKNTVLGASAAAAVSAVTGDRAIATEEVLGG
CCCCEEECCHHHHHHHHHHHHCCCCCCCEEHHHHCCCHHHHHHHHHCCCCHHHHHHHHCH
AAIGGLISLFFGRNSVDLIAIDPDTDLQMTINQNLLVSLR
HHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA