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The map label for this gene is 17231336

Identifier: 17231336

GI number: 17231336

Start: 4642891

End: 4643910

Strand: Direct

Name: 17231336

Synonym: alr3844

Alternate gene names: NA

Gene position: 4642891-4643910 (Clockwise)

Preceding gene: 17231335

Following gene: 17231337

Centisome position: 72.39

GC content: 45.88

Gene sequence:

>1020_bases
ATGGTTATTGTGAAAAGTTGGCAAAAAATATTTACTTTGTTGGTGGTCTTACTCTTGTGTATTGGTTGTAGTAAGGTTCC
CTCTACCAGCTACAACCCTTGGGCAGTGGTTTCTTTGCCAACAGAGGCCAAATTACTGGATATTGCTTTTACAGAAAATC
CTCAGCATGGTTTTTTAGTAGGTAGTAGTGCCACCTTGCTAGAAACCAATGATGGTGGTAATAATTGGCAGCCCCTGAAT
TTGGCACTGGATGATGATAGATACCGTTTTGACTCAGTAAGTTTCGCTGGCAAAGAAGGCTGGATTGTCGGTGAACCTTC
TTTGCTATTGCACACCACAGATGAGGGTCGTTCTTGGTCACGCATTCCCTTGAGTGAGAAACTCCCCGGTAATCCCATCG
CTATCCAAGCTTTGGGAACAGACATAGCTGAGATGGCTACAGATGTAGGTGCTATCTATAAAACTACTGATGGCGGAAAA
AATTGGAAAGCCCAAGTAGAGGCTGCTGTAGGGGTAGTGCGGAACTTGGAACGTTCTGTGGATGGTAAGTATGTTGCTGT
TTCTGCAAAGGGTAGTTTCTACTCTACTTGGGAAGCAGGACAAAATGCTTGGGTTCCCCACAACCGTAATAGTTCTCGCC
GTGTAGAAAATATGGGATTTTCACAGGATGGGCTGTGGTTACTCGCTAGGGGTGGTCAGGTACAATTTAGCGACCCAGCT
AACCCGGATGAGTGGTTAGATGCCGAAACTCCTGAGCTGGCGACCAGTTGGGGTTTACTGGATATGGCCTATCGCACACC
AAACGAAGTTTGGATTGGCGGCGGTAGTGGTAACTTATTGGTAAGTACTGATGGCGGCAAAACCTGGGAAAAAGACCGAG
ATGTAGAAGAAGTGGCAGCTAATTTTTACAAGGTTGTCTTTCTCAAGCCCGATCAGGGATTTGTGATTGGCGATCGCGGT
GTTTTACTAAAATATCAACCAGAGGCAGCAAAAACTGCCACAACAGAACCAGCTGCTTAG

Upstream 100 bases:

>100_bases
AATCAGCTTTTTTTACTCAGCACTCATTAGTCTTTCAATCTGCTTAAGGTAAACCTTCTAGAAAAACCTTACACAAATTC
AGAAACAAATAAAGAAATCG

Downstream 100 bases:

>100_bases
GTAGTTTTCCTAACTTTTATGAGAAGAAAGTTGCAACTTGTAACTCTTTCTTAACTTTGTAGGATAATAAACTCAATAAC
AATCTTTGTGAAGGTGGGAA

Product: Ycf48-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MVIVKSWQKIFTLLVVLLLCIGCSKVPSTSYNPWAVVSLPTEAKLLDIAFTENPQHGFLVGSSATLLETNDGGNNWQPLN
LALDDDRYRFDSVSFAGKEGWIVGEPSLLLHTTDEGRSWSRIPLSEKLPGNPIAIQALGTDIAEMATDVGAIYKTTDGGK
NWKAQVEAAVGVVRNLERSVDGKYVAVSAKGSFYSTWEAGQNAWVPHNRNSSRRVENMGFSQDGLWLLARGGQVQFSDPA
NPDEWLDAETPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVIGDRG
VLLKYQPEAAKTATTEPAA

Sequences:

>Translated_339_residues
MVIVKSWQKIFTLLVVLLLCIGCSKVPSTSYNPWAVVSLPTEAKLLDIAFTENPQHGFLVGSSATLLETNDGGNNWQPLN
LALDDDRYRFDSVSFAGKEGWIVGEPSLLLHTTDEGRSWSRIPLSEKLPGNPIAIQALGTDIAEMATDVGAIYKTTDGGK
NWKAQVEAAVGVVRNLERSVDGKYVAVSAKGSFYSTWEAGQNAWVPHNRNSSRRVENMGFSQDGLWLLARGGQVQFSDPA
NPDEWLDAETPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVIGDRG
VLLKYQPEAAKTATTEPAA
>Mature_339_residues
MVIVKSWQKIFTLLVVLLLCIGCSKVPSTSYNPWAVVSLPTEAKLLDIAFTENPQHGFLVGSSATLLETNDGGNNWQPLN
LALDDDRYRFDSVSFAGKEGWIVGEPSLLLHTTDEGRSWSRIPLSEKLPGNPIAIQALGTDIAEMATDVGAIYKTTDGGK
NWKAQVEAAVGVVRNLERSVDGKYVAVSAKGSFYSTWEAGQNAWVPHNRNSSRRVENMGFSQDGLWLLARGGQVQFSDPA
NPDEWLDAETPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAANFYKVVFLKPDQGFVIGDRG
VLLKYQPEAAKTATTEPAA

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity [H]

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002860
- InterPro:   IPR016705 [H]

Pfam domain/function: PF02012 BNR [H]

EC number: NA

Molecular weight: Translated: 36982; Mature: 36982

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVIVKSWQKIFTLLVVLLLCIGCSKVPSTSYNPWAVVSLPTEAKLLDIAFTENPQHGFLV
CEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCEEE
GSSATLLETNDGGNNWQPLNLALDDDRYRFDSVSFAGKEGWIVGEPSLLLHTTDEGRSWS
ECCEEEEEECCCCCCEEEEEEEECCCCEEECCEEECCCCCEEEECCCEEEEECCCCCCCC
RIPLSEKLPGNPIAIQALGTDIAEMATDVGAIYKTTDGGKNWKAQVEAAVGVVRNLERSV
CCCCCCCCCCCCEEEEECCCCHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHC
DGKYVAVSAKGSFYSTWEAGQNAWVPHNRNSSRRVENMGFSQDGLWLLARGGQVQFSDPA
CCCEEEEEECCCEEEEHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCEEEECCCC
NPDEWLDAETPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAA
CHHHCCCCCCCCHHHHCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCHHHHHC
NFYKVVFLKPDQGFVIGDRGVLLKYQPEAAKTATTEPAA
CEEEEEEEECCCCEEECCCCEEEEECCCCCCCCCCCCCC
>Mature Secondary Structure
MVIVKSWQKIFTLLVVLLLCIGCSKVPSTSYNPWAVVSLPTEAKLLDIAFTENPQHGFLV
CEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCEEEEEEEECCCCCCEEE
GSSATLLETNDGGNNWQPLNLALDDDRYRFDSVSFAGKEGWIVGEPSLLLHTTDEGRSWS
ECCEEEEEECCCCCCEEEEEEEECCCCEEECCEEECCCCCEEEECCCEEEEECCCCCCCC
RIPLSEKLPGNPIAIQALGTDIAEMATDVGAIYKTTDGGKNWKAQVEAAVGVVRNLERSV
CCCCCCCCCCCCEEEEECCCCHHHHHHHHCEEEEECCCCCCCHHHHHHHHHHHHHHHHHC
DGKYVAVSAKGSFYSTWEAGQNAWVPHNRNSSRRVENMGFSQDGLWLLARGGQVQFSDPA
CCCEEEEEECCCEEEEHHCCCCCCCCCCCCCCHHHHHCCCCCCCEEEEEECCEEEECCCC
NPDEWLDAETPELATSWGLLDMAYRTPNEVWIGGGSGNLLVSTDGGKTWEKDRDVEEVAA
CHHHCCCCCCCCHHHHCCEEEEEECCCCEEEEECCCCCEEEECCCCCCCCCCCCHHHHHC
NFYKVVFLKPDQGFVIGDRGVLLKYQPEAAKTATTEPAA
CEEEEEEEECCCCEEECCCCEEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA