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The map label for this gene is ykfC [C]

Identifier: 17230989

GI number: 17230989

Start: 4211334

End: 4212392

Strand: Direct

Name: ykfC [C]

Synonym: alr3497

Alternate gene names: 17230989

Gene position: 4211334-4212392 (Clockwise)

Preceding gene: 17230988

Following gene: 17230990

Centisome position: 65.66

GC content: 35.41

Gene sequence:

>1059_bases
ATGAAACGTTACGGTAATCTTTACCAGGAAATCATTAATTTTGAAAATATACTTATAGCATCGCGTCAAGCACAAAAAAG
CAAGCGGTTTCGGGACAATGTTTTAGATTTTAATTATCATCTAGAAACTGAATTAATTAAATTACAGAAACACTTAACAG
ATAAAACCTATCAGCCAGGAGCTTACCGAACATTTCGTTTAACCAACCCCAAGAGTCGCTTAATTTCTGCCGCACCCTAT
CGAGATAGAGTTGTTCACCATGCACTATGCAACATCATTGTGCCAATTTTCGAGAGAGCTTTTGTAGCTGATTCTTATGC
TAACAGAATTGGTTTTGGAACCCATCGAGCGTTGAAAAAATTTACTCATTCTGCTCGTAACAGCCCCTATGTACTTCAAT
GTGATATCAGAAAATATTTTCCGAGTATTGACCACATAATTTTAAAAGAATTAATCCGTCGTAAAATCAAATGCCCCGAT
ACATTGTGGTTAATTGACACTATCATCGATAATAGCAACGAACAAGAAACAGTGATTGATTATTTTGCTGGAGATGATTT
ACTCTCTCCTATAACTCGCAGGAAAGGTTTACCTATTGGAAATTTGACCAGCCAATTTTTTGCGAATATTTATTTAAATG
GCTTTGATAAAATTATCAAAGAAGAGCTAAAAATATCCAAATATGTCCGTTATGTTGATGACTTTGCCTTATTTAGTGAT
GACCGAGAATTATTAGCCGATGCTAGACTAGCAATAGAAGCATATTTAGCTGAATTAAGGCTGAAAATCCACCCAATTAA
AAGCCAATTATTTGAAACGAAAATTGGTGCAACTTTTCTGGGCTTCAGGATATTTTCTCACAAAATTCGGGTCAGAAATA
GTAATTTACATCAAGCAAGGCGCAGACTTAAGCGATTGAAAACAGACTATGCTCAAGGTAAACTTGAACTTAATCAAGTA
ACTCAATCTATGAGAAGTTGGATTGCTCACCTAGAACATGGTGATACTTGGCGATTACGCAAACAGATATTTACTTCCCT
CCATTTTAGGAGAAAGTAG

Upstream 100 bases:

>100_bases
ACGAATATGTTATCAAGCTAATAGATGAAATTGGTACGGAATTAGGGGGTTGGATTAAAAATCAAAGAAACAGAGAAAAA
TGATATTTAAATAAAAGATA

Downstream 100 bases:

>100_bases
AGAAGGGGTAGGCGAACCCGACTGCGGGGCGGCTCCTGGAACAACAATCCTGAAAACTGCCGTTCCGCGTCCCGCAACAA
CAACAATAGGGCGGAGCGCG

Product: hypothetical protein

Products: NA

Alternate protein names: Retron-Type Reverse Transcriptase; Reverse Transcriptase Family Protein; Reverse Transcriptase; Reverse Transcriptase/Maturase; Reverse Transcriptase/Maturase Family Protein; CRISPR-Associated Protein; Group II Intron Maturase-Specific Domain Family; CRISPR-Associated Cas1 Family Protein; GBSi1 Group II Intron Maturase; Phage-Encoded Reverse Transcriptase; Maturase; Group II Intron Maturase; Group II Intron; Group II Intron Reverse Transcriptase/Maturase

Number of amino acids: Translated: 352; Mature: 352

Protein sequence:

>352_residues
MKRYGNLYQEIINFENILIASRQAQKSKRFRDNVLDFNYHLETELIKLQKHLTDKTYQPGAYRTFRLTNPKSRLISAAPY
RDRVVHHALCNIIVPIFERAFVADSYANRIGFGTHRALKKFTHSARNSPYVLQCDIRKYFPSIDHIILKELIRRKIKCPD
TLWLIDTIIDNSNEQETVIDYFAGDDLLSPITRRKGLPIGNLTSQFFANIYLNGFDKIIKEELKISKYVRYVDDFALFSD
DRELLADARLAIEAYLAELRLKIHPIKSQLFETKIGATFLGFRIFSHKIRVRNSNLHQARRRLKRLKTDYAQGKLELNQV
TQSMRSWIAHLEHGDTWRLRKQIFTSLHFRRK

Sequences:

>Translated_352_residues
MKRYGNLYQEIINFENILIASRQAQKSKRFRDNVLDFNYHLETELIKLQKHLTDKTYQPGAYRTFRLTNPKSRLISAAPY
RDRVVHHALCNIIVPIFERAFVADSYANRIGFGTHRALKKFTHSARNSPYVLQCDIRKYFPSIDHIILKELIRRKIKCPD
TLWLIDTIIDNSNEQETVIDYFAGDDLLSPITRRKGLPIGNLTSQFFANIYLNGFDKIIKEELKISKYVRYVDDFALFSD
DRELLADARLAIEAYLAELRLKIHPIKSQLFETKIGATFLGFRIFSHKIRVRNSNLHQARRRLKRLKTDYAQGKLELNQV
TQSMRSWIAHLEHGDTWRLRKQIFTSLHFRRK
>Mature_352_residues
MKRYGNLYQEIINFENILIASRQAQKSKRFRDNVLDFNYHLETELIKLQKHLTDKTYQPGAYRTFRLTNPKSRLISAAPY
RDRVVHHALCNIIVPIFERAFVADSYANRIGFGTHRALKKFTHSARNSPYVLQCDIRKYFPSIDHIILKELIRRKIKCPD
TLWLIDTIIDNSNEQETVIDYFAGDDLLSPITRRKGLPIGNLTSQFFANIYLNGFDKIIKEELKISKYVRYVDDFALFSD
DRELLADARLAIEAYLAELRLKIHPIKSQLFETKIGATFLGFRIFSHKIRVRNSNLHQARRRLKRLKTDYAQGKLELNQV
TQSMRSWIAHLEHGDTWRLRKQIFTSLHFRRK

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 41574; Mature: 41574

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRYGNLYQEIINFENILIASRQAQKSKRFRDNVLDFNYHLETELIKLQKHLTDKTYQPG
CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCC
AYRTFRLTNPKSRLISAAPYRDRVVHHALCNIIVPIFERAFVADSYANRIGFGTHRALKK
CCEEEEECCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FTHSARNSPYVLQCDIRKYFPSIDHIILKELIRRKIKCPDTLWLIDTIIDNSNEQETVID
HHHHHCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHH
YFAGDDLLSPITRRKGLPIGNLTSQFFANIYLNGFDKIIKEELKISKYVRYVDDFALFSD
HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DRELLADARLAIEAYLAELRLKIHPIKSQLFETKIGATFLGFRIFSHKIRVRNSNLHQAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHH
RRLKRLKTDYAQGKLELNQVTQSMRSWIAHLEHGDTWRLRKQIFTSLHFRRK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRYGNLYQEIINFENILIASRQAQKSKRFRDNVLDFNYHLETELIKLQKHLTDKTYQPG
CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHCCCCCCCC
AYRTFRLTNPKSRLISAAPYRDRVVHHALCNIIVPIFERAFVADSYANRIGFGTHRALKK
CCEEEEECCCHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FTHSARNSPYVLQCDIRKYFPSIDHIILKELIRRKIKCPDTLWLIDTIIDNSNEQETVID
HHHHHCCCCEEEEEEHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHH
YFAGDDLLSPITRRKGLPIGNLTSQFFANIYLNGFDKIIKEELKISKYVRYVDDFALFSD
HHCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DRELLADARLAIEAYLAELRLKIHPIKSQLFETKIGATFLGFRIFSHKIRVRNSNLHQAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHH
RRLKRLKTDYAQGKLELNQVTQSMRSWIAHLEHGDTWRLRKQIFTSLHFRRK
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA