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The map label for this gene is 17230922

Identifier: 17230922

GI number: 17230922

Start: 4137079

End: 4137603

Strand: Direct

Name: 17230922

Synonym: alr3430

Alternate gene names: NA

Gene position: 4137079-4137603 (Clockwise)

Preceding gene: 17230921

Following gene: 17230923

Centisome position: 64.5

GC content: 40.95

Gene sequence:

>525_bases
ATGGATAACAGTCTAGCGGTTGTTTATCTCTCCGTGTTGGTGGGGATACTGGGATTTGCAGTTGTGAGTGTTTTCCGCCA
GCTGTTCAAAACTCGTAAGCGTGAAAGTGCTTTATCACGGTTACGTAACAAGTTGAGTAAAGACAAGGGTACAGCTCAAG
AATATTATGAGTTAGCGTGTATTTATTCAGAGAAGAAAGTGTACACACAAGCTATACCTTTGTTCCAAAAGGCTCTTAAA
GCAGCCGAAGAAGAAGGAGAAGAAAATACTGCACCTATCTACAATGGTTTGGGTTACGCCTATTTTGCTCAAGAGCAGTA
TGATTTAGCAATTCGTCAGTATAAGGAAGCACTAAAATTTAAACCCGATTATGTAGTAGCTTTAAATAACTTGGGTCATG
CTTATGAGCGTAAAAAACTCACTGCTCAGGCTTTGCAAATGTACGAAGAAGCACTCAAATTTGCTCCCAATAATGCGACA
GCCAAACGTCGTGCGGAGTCTTTACGGCGTTTAGTTACTGCTTGA

Upstream 100 bases:

>100_bases
GCTCCCCCTGCTTCCCCTGCTCCCTTGCCCCTCCTCTTAAGAGTCCCCAAAAGACCCATAATAGAGATAGAAGACACTTT
AATAATTTGATTTGAAGATA

Downstream 100 bases:

>100_bases
TGGTTCTATATCCTAGATCCCCGATTTCTCAAAAAAGTCGGGTATCTGTCTTAACTATTCGGTTTTATATCTGAATTCTG
GGAAATAAATAACTATAAAT

Product: hypothetical protein

Products: NA

Alternate protein names: Photosystem I Assembly Related Protein Ycf; Tetratricopeptide Repeat Domain Protein; Photosystem I Assembly Protein; Photosystem I Assembly Related Protein; Tetratricopeptide Repeat Protein; TPR Repeat-Containing Photosystem I Assembly Protein Ycf; TPR Domain-Containing Protein

Number of amino acids: Translated: 174; Mature: 174

Protein sequence:

>174_residues
MDNSLAVVYLSVLVGILGFAVVSVFRQLFKTRKRESALSRLRNKLSKDKGTAQEYYELACIYSEKKVYTQAIPLFQKALK
AAEEEGEENTAPIYNGLGYAYFAQEQYDLAIRQYKEALKFKPDYVVALNNLGHAYERKKLTAQALQMYEEALKFAPNNAT
AKRRAESLRRLVTA

Sequences:

>Translated_174_residues
MDNSLAVVYLSVLVGILGFAVVSVFRQLFKTRKRESALSRLRNKLSKDKGTAQEYYELACIYSEKKVYTQAIPLFQKALK
AAEEEGEENTAPIYNGLGYAYFAQEQYDLAIRQYKEALKFKPDYVVALNNLGHAYERKKLTAQALQMYEEALKFAPNNAT
AKRRAESLRRLVTA
>Mature_174_residues
MDNSLAVVYLSVLVGILGFAVVSVFRQLFKTRKRESALSRLRNKLSKDKGTAQEYYELACIYSEKKVYTQAIPLFQKALK
AAEEEGEENTAPIYNGLGYAYFAQEQYDLAIRQYKEALKFKPDYVVALNNLGHAYERKKLTAQALQMYEEALKFAPNNAT
AKRRAESLRRLVTA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19835; Mature: 19835

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNSLAVVYLSVLVGILGFAVVSVFRQLFKTRKRESALSRLRNKLSKDKGTAQEYYELAC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IYSEKKVYTQAIPLFQKALKAAEEEGEENTAPIYNGLGYAYFAQEQYDLAIRQYKEALKF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHC
KPDYVVALNNLGHAYERKKLTAQALQMYEEALKFAPNNATAKRRAESLRRLVTA
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDNSLAVVYLSVLVGILGFAVVSVFRQLFKTRKRESALSRLRNKLSKDKGTAQEYYELAC
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
IYSEKKVYTQAIPLFQKALKAAEEEGEENTAPIYNGLGYAYFAQEQYDLAIRQYKEALKF
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHC
KPDYVVALNNLGHAYERKKLTAQALQMYEEALKFAPNNATAKRRAESLRRLVTA
CCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA