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The map label for this gene is rnpA [H]

Identifier: 17230905

GI number: 17230905

Start: 4122806

End: 4123228

Strand: Direct

Name: rnpA [H]

Synonym: alr3413

Alternate gene names: 17230905

Gene position: 4122806-4123228 (Clockwise)

Preceding gene: 17230904

Following gene: 17230906

Centisome position: 64.28

GC content: 45.15

Gene sequence:

>423_bases
GTGGCATTGCCCAAAGCAAATCGATTAAAATCCCGGCATGATTTTCAGGCAGTTTTCCGAGAAGGGCTGAGACGAAACAG
CTCACATTTCACATTGCGAGCATTAAAACCGTCATCTGCCAGAAAGTCTTCTTTGGATACTGCCGCTCAAACCCAACCAG
TAGATGAAGTACAAAATATACCTAGTACGCTCATTGGTGTCTCGATTAGTACCAAAGTTAGTAAGAGGGCGGTGGTGCGT
AACCGCATAAAACGGCAAATTACGGCTGCTATGCAGCAATTATTGCCGAGATTAGCACCAGGGTGGAAATTAGTAGTAAT
TGTGAAGCCAACAGCCGCAGAAAGTAAGTGCGGAAGCCAGCAATTTCTGCAAGAATTAGAGCAGTTGTTGGCACAAACTG
AGGTATTACATGGGCATTCGTGA

Upstream 100 bases:

>100_bases
AGAATGCGGACTCCAGATGGCAGAAACGTCATCAGAGCCAGAAGAAAGAGAGGTCGTCATCGTTTGAGCGTGTAGGGTAT
TTTAGGCGCAAAGAATAGCT

Downstream 100 bases:

>100_bases
AGAAGTTTATTATGAAGGCGGCCCCCACATTGGGGATCTAATTTTGAATATACTAGTTGGGCTAACTGTTGTAGGTATTC
CCTTAGCAGTTGGAGCAATT

Product: ribonuclease P

Products: NA

Alternate protein names: RNase P protein; RNaseP protein; Protein C5 [H]

Number of amino acids: Translated: 140; Mature: 139

Protein sequence:

>140_residues
MALPKANRLKSRHDFQAVFREGLRRNSSHFTLRALKPSSARKSSLDTAAQTQPVDEVQNIPSTLIGVSISTKVSKRAVVR
NRIKRQITAAMQQLLPRLAPGWKLVVIVKPTAAESKCGSQQFLQELEQLLAQTEVLHGHS

Sequences:

>Translated_140_residues
MALPKANRLKSRHDFQAVFREGLRRNSSHFTLRALKPSSARKSSLDTAAQTQPVDEVQNIPSTLIGVSISTKVSKRAVVR
NRIKRQITAAMQQLLPRLAPGWKLVVIVKPTAAESKCGSQQFLQELEQLLAQTEVLHGHS
>Mature_139_residues
ALPKANRLKSRHDFQAVFREGLRRNSSHFTLRALKPSSARKSSLDTAAQTQPVDEVQNIPSTLIGVSISTKVSKRAVVRN
RIKRQITAAMQQLLPRLAPGWKLVVIVKPTAAESKCGSQQFLQELEQLLAQTEVLHGHS

Specific function: RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-lead

COG id: COG0594

COG function: function code J; RNase P protein component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rnpA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020568
- InterPro:   IPR014721
- InterPro:   IPR000100
- ProDom:   PD003629 [H]

Pfam domain/function: PF00825 Ribonuclease_P [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 15545; Mature: 15414

Theoretical pI: Translated: 11.78; Mature: 11.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALPKANRLKSRHDFQAVFREGLRRNSSHFTLRALKPSSARKSSLDTAAQTQPVDEVQNI
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHC
PSTLIGVSISTKVSKRAVVRNRIKRQITAAMQQLLPRLAPGWKLVVIVKPTAAESKCGSQ
CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHH
QFLQELEQLLAQTEVLHGHS
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALPKANRLKSRHDFQAVFREGLRRNSSHFTLRALKPSSARKSSLDTAAQTQPVDEVQNI
CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCHHHHHHC
PSTLIGVSISTKVSKRAVVRNRIKRQITAAMQQLLPRLAPGWKLVVIVKPTAAESKCGSQ
CHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHH
QFLQELEQLLAQTEVLHGHS
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA