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The map label for this gene is ykfA [H]

Identifier: 17230765

GI number: 17230765

Start: 3945975

End: 3947081

Strand: Direct

Name: ykfA [H]

Synonym: alr3273

Alternate gene names: 17230765

Gene position: 3945975-3947081 (Clockwise)

Preceding gene: 17230761

Following gene: 17230768

Centisome position: 61.52

GC content: 41.19

Gene sequence:

>1107_bases
ATGAATATCAAGCGTCGGCAATTTCTGAAAACTTGCGGATTAGCTACTGTAGCTACTCAGATTCCTATACTGACTGCTCA
AGGTGAGCAATGGTCTTCTTTACATTCGCGGAGCGTATCGAAGACAGACGCTACGCGTAGCTCGCTTCTCCGGAGGAGTA
AGAGCGACGTTCAGTTATCGCCAAGTAGCACTATCAAGCCACCACGTTTACAAGTAGGCGATACGGTGGGGTTAATTGCG
CCGGCTGGTACTTTTGAACCTCGATATATAGAAGTAGTCCAGCAACATCTGACTAATTTGGGATTAAAAGCTAAGGTAGG
AAGACATATTTTAGACCGTTATGGTTATTTAGCAGGCAAAGATGCTGACCGCGCCCAAGATGTAAATGATATGTTTGCAG
ATGATTCGGTTCAGGCAATTCTGGCTATGCGGGGAGGTTGGGGTTGCAATCGGATTTTACCCCTGCTCAATTACCCTTTA
ATTCGTTCCCATGCCAAAATCCTCATGGGTTATAGCGATATCACTTCTTTATTATTAGCGATTAATGCCCGTAGTCGTAT
TTTCACTTTTCACGGGCCTGTGGCTACATCCACCTGGACACCCTTTATGCTGGAGTACCTGAAGCGTATTTTGTTTAATG
CAGAAGCAGTAACATTACAAAATACTGATTCTCCTGAGGGAAAAGTACAAACAATCACACCAGGAAAAACTCAAGGTCAA
CTTGTAGGAGGTAATTTGTCAGTTTTATCGGCGATGGTTGGTTCTCCCTATCTACCTAGTTGGCAAAATAGAATTTTATT
CTTGGAAGATATCAACGAGGATGTTTATCGCGTAGATAGGATGTTGACACAGTTAAAAAATGCTGGGATATTATATCGAA
TTTCTGGTTTTATCTTTGGGCAATGTACTGACTGTAATCAAACTAATGAAAAATCTCAGACATTAATAGAAGTATTACAA
GACCACATTACTCCTTTAAAAATACCTGCTTGGTATGGTGCAATGATTGGTCATATTCAAGATAAATTCATCTTACCAAT
TGGCGCAAATGTGGAAATCGACGCTGATGCTGGAACAATAAAATTATTAGAGGCGGCAGTCAATTGA

Upstream 100 bases:

>100_bases
ACCCTTGTATATTAAAAGAAGTAGTAGACCCACAACTAAAGTTGTGATTAATACTTTTTTCTTGTGCGCTCTGACTGTCT
TTGTAAGTTAAACTCCCTTC

Downstream 100 bases:

>100_bases
AAAATGCTAATTTGTAATTAATTCGTACTACTTATGGTACGAATTAAACAGTATTTTCTACAATTTCCACAAATATATAG
GTGTTCAAACGCAAGCTATA

Product: hypothetical protein

Products: NA

Alternate protein names: LD-carboxypeptidase [H]

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MNIKRRQFLKTCGLATVATQIPILTAQGEQWSSLHSRSVSKTDATRSSLLRRSKSDVQLSPSSTIKPPRLQVGDTVGLIA
PAGTFEPRYIEVVQQHLTNLGLKAKVGRHILDRYGYLAGKDADRAQDVNDMFADDSVQAILAMRGGWGCNRILPLLNYPL
IRSHAKILMGYSDITSLLLAINARSRIFTFHGPVATSTWTPFMLEYLKRILFNAEAVTLQNTDSPEGKVQTITPGKTQGQ
LVGGNLSVLSAMVGSPYLPSWQNRILFLEDINEDVYRVDRMLTQLKNAGILYRISGFIFGQCTDCNQTNEKSQTLIEVLQ
DHITPLKIPAWYGAMIGHIQDKFILPIGANVEIDADAGTIKLLEAAVN

Sequences:

>Translated_368_residues
MNIKRRQFLKTCGLATVATQIPILTAQGEQWSSLHSRSVSKTDATRSSLLRRSKSDVQLSPSSTIKPPRLQVGDTVGLIA
PAGTFEPRYIEVVQQHLTNLGLKAKVGRHILDRYGYLAGKDADRAQDVNDMFADDSVQAILAMRGGWGCNRILPLLNYPL
IRSHAKILMGYSDITSLLLAINARSRIFTFHGPVATSTWTPFMLEYLKRILFNAEAVTLQNTDSPEGKVQTITPGKTQGQ
LVGGNLSVLSAMVGSPYLPSWQNRILFLEDINEDVYRVDRMLTQLKNAGILYRISGFIFGQCTDCNQTNEKSQTLIEVLQ
DHITPLKIPAWYGAMIGHIQDKFILPIGANVEIDADAGTIKLLEAAVN
>Mature_368_residues
MNIKRRQFLKTCGLATVATQIPILTAQGEQWSSLHSRSVSKTDATRSSLLRRSKSDVQLSPSSTIKPPRLQVGDTVGLIA
PAGTFEPRYIEVVQQHLTNLGLKAKVGRHILDRYGYLAGKDADRAQDVNDMFADDSVQAILAMRGGWGCNRILPLLNYPL
IRSHAKILMGYSDITSLLLAINARSRIFTFHGPVATSTWTPFMLEYLKRILFNAEAVTLQNTDSPEGKVQTITPGKTQGQ
LVGGNLSVLSAMVGSPYLPSWQNRILFLEDINEDVYRVDRMLTQLKNAGILYRISGFIFGQCTDCNQTNEKSQTLIEVLQ
DHITPLKIPAWYGAMIGHIQDKFILPIGANVEIDADAGTIKLLEAAVN

Specific function: May be involved in the degradation of peptidoglycan by catalyzing the cleavage of the terminal D-alanine residue from cytoplasmic murein peptides [H]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=280, Percent_Identity=30.7142857142857, Blast_Score=113, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 40665; Mature: 40665

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKRRQFLKTCGLATVATQIPILTAQGEQWSSLHSRSVSKTDATRSSLLRRSKSDVQLS
CCCHHHHHHHHHCHHHHHHHCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEC
PSSTIKPPRLQVGDTVGLIAPAGTFEPRYIEVVQQHLTNLGLKAKVGRHILDRYGYLAGK
CCCCCCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
DADRAQDVNDMFADDSVQAILAMRGGWGCNRILPLLNYPLIRSHAKILMGYSDITSLLLA
CCHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
INARSRIFTFHGPVATSTWTPFMLEYLKRILFNAEAVTLQNTDSPEGKVQTITPGKTQGQ
HCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCE
LVGGNLSVLSAMVGSPYLPSWQNRILFLEDINEDVYRVDRMLTQLKNAGILYRISGFIFG
EECCCHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECEEEE
QCTDCNQTNEKSQTLIEVLQDHITPLKIPAWYGAMIGHIQDKFILPIGANVEIDADAGTI
EECCCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCEEEEECCCEEEECCCCHH
KLLEAAVN
HHHHHHCC
>Mature Secondary Structure
MNIKRRQFLKTCGLATVATQIPILTAQGEQWSSLHSRSVSKTDATRSSLLRRSKSDVQLS
CCCHHHHHHHHHCHHHHHHHCCEEEECCCHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEC
PSSTIKPPRLQVGDTVGLIAPAGTFEPRYIEVVQQHLTNLGLKAKVGRHILDRYGYLAGK
CCCCCCCCCEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
DADRAQDVNDMFADDSVQAILAMRGGWGCNRILPLLNYPLIRSHAKILMGYSDITSLLLA
CCHHHHHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHH
INARSRIFTFHGPVATSTWTPFMLEYLKRILFNAEAVTLQNTDSPEGKVQTITPGKTQGQ
HCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCCCCCCE
LVGGNLSVLSAMVGSPYLPSWQNRILFLEDINEDVYRVDRMLTQLKNAGILYRISGFIFG
EECCCHHHHHHHHCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECEEEE
QCTDCNQTNEKSQTLIEVLQDHITPLKIPAWYGAMIGHIQDKFILPIGANVEIDADAGTI
EECCCCCCCHHHHHHHHHHHHCCCCEECHHHHHHHHHHCCCCEEEEECCCEEEECCCCHH
KLLEAAVN
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]