Click here to switch to the map view.

The map label for this gene is yesS [H]

Identifier: 17230663

GI number: 17230663

Start: 3840824

End: 3841744

Strand: Reverse

Name: yesS [H]

Synonym: all3171

Alternate gene names: 17230663

Gene position: 3841744-3840824 (Counterclockwise)

Preceding gene: 17230665

Following gene: 17230661

Centisome position: 59.9

GC content: 41.69

Gene sequence:

>921_bases
GTGAGAATGATGTCGGAAGAGAAAATCTTAAGTGTTGATTTTACTCAAGAAGATGCCTATACAGAAATTCTACCGCGATC
GCCCCTGGTTTCTAGTTATCATGCCCAATGGCAAGGTCTACGGTTAGATGTTCACCAACAGCCTGGCCATGAAACTCCAG
AACACAGCCCACAGCAACACGTCCTCACTGTTAGCTTAGACCAGCAAATAGTCCGTTTAGAGCGCATACTTGATGGGCGT
TTGCAGTATGAGAATATAGCTAAGGGCGATGTGGCAATCATTCCTGCCCAAACTCATCACATATCACGCTGGCAATCAGA
AACAAAATTTTTAGTCCTCAGTGTAGAACCAGCTTTTTTTACACGTATGGTGATAGAAGCTGGAGATTTACAGAAAATTG
AAATAAAACCTCGTTTTGCTGCACCAGATCCCTTAGTTCAACAAATTGGGCTAGCACTTCAAACAGAACTAGAATCTGAG
CATAAAGGTAGCAGCATTTACATTGAGTCTCTAACAACCACGCTGTGTATTCACCTACTCAAACACTATTGCGTAACAGG
TGGAACAATCCTTGACGACCATCATCATAAAGGACTTTCACACTGGAAACTCAGGCAAGCAATTTCCTACATTCATGAAA
ACCTTGACCAAGATTTGACTTTGGTCGATATTTCCACAGCAGTAGGAATGAGTATGTATTACTTTTCGCGCCAATTTAAG
CAATCAACAGGTTTTGCACCACATCAGTATGTTATGAATTGCCGAATTGAACGCGCAAAAAAGTTACTGGGTAGCACTAA
CAAAACCATAGAGCAAATATGCACCCAAGTCGGCTTTCAAAGCCAAAGCCACTTCACAAATGTATTTCGTAAACTCATGG
GTATTACACCCAGGGTATACAGGGAACAAGTCAAGACTTAA

Upstream 100 bases:

>100_bases
ATTAATTCAGTAAATTTCAGTTAAATTGCCAATTGCTTTGACTAACTTAATTTTTGGCGCATACTGAATATACTGTTACA
CCAAAACCCAAAACCTTGGG

Downstream 100 bases:

>100_bases
TCGGGGCTTGGGCGCGTTGCATCAATGCGGGATGATTTCTATCACGCAGAGACGCAGAGAGGATAAAGAGTTTGAAATTT
CATGTTGTTTCAATCCCTAA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MRMMSEEKILSVDFTQEDAYTEILPRSPLVSSYHAQWQGLRLDVHQQPGHETPEHSPQQHVLTVSLDQQIVRLERILDGR
LQYENIAKGDVAIIPAQTHHISRWQSETKFLVLSVEPAFFTRMVIEAGDLQKIEIKPRFAAPDPLVQQIGLALQTELESE
HKGSSIYIESLTTTLCIHLLKHYCVTGGTILDDHHHKGLSHWKLRQAISYIHENLDQDLTLVDISTAVGMSMYYFSRQFK
QSTGFAPHQYVMNCRIERAKKLLGSTNKTIEQICTQVGFQSQSHFTNVFRKLMGITPRVYREQVKT

Sequences:

>Translated_306_residues
MRMMSEEKILSVDFTQEDAYTEILPRSPLVSSYHAQWQGLRLDVHQQPGHETPEHSPQQHVLTVSLDQQIVRLERILDGR
LQYENIAKGDVAIIPAQTHHISRWQSETKFLVLSVEPAFFTRMVIEAGDLQKIEIKPRFAAPDPLVQQIGLALQTELESE
HKGSSIYIESLTTTLCIHLLKHYCVTGGTILDDHHHKGLSHWKLRQAISYIHENLDQDLTLVDISTAVGMSMYYFSRQFK
QSTGFAPHQYVMNCRIERAKKLLGSTNKTIEQICTQVGFQSQSHFTNVFRKLMGITPRVYREQVKT
>Mature_306_residues
MRMMSEEKILSVDFTQEDAYTEILPRSPLVSSYHAQWQGLRLDVHQQPGHETPEHSPQQHVLTVSLDQQIVRLERILDGR
LQYENIAKGDVAIIPAQTHHISRWQSETKFLVLSVEPAFFTRMVIEAGDLQKIEIKPRFAAPDPLVQQIGLALQTELESE
HKGSSIYIESLTTTLCIHLLKHYCVTGGTILDDHHHKGLSHWKLRQAISYIHENLDQDLTLVDISTAVGMSMYYFSRQFK
QSTGFAPHQYVMNCRIERAKKLLGSTNKTIEQICTQVGFQSQSHFTNVFRKLMGITPRVYREQVKT

Specific function: Probable transcription factor regulating the pathway responsible for rhamnogalacturonan depolymerization [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790559, Length=97, Percent_Identity=34.020618556701, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 35148; Mature: 35148

Theoretical pI: Translated: 7.31; Mature: 7.31

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRMMSEEKILSVDFTQEDAYTEILPRSPLVSSYHAQWQGLRLDVHQQPGHETPEHSPQQH
CCCCCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE
VLTVSLDQQIVRLERILDGRLQYENIAKGDVAIIPAQTHHISRWQSETKFLVLSVEPAFF
EEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCEEEEEEECHHHH
TRMVIEAGDLQKIEIKPRFAAPDPLVQQIGLALQTELESEHKGSSIYIESLTTTLCIHLL
HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH
KHYCVTGGTILDDHHHKGLSHWKLRQAISYIHENLDQDLTLVDISTAVGMSMYYFSRQFK
HHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH
QSTGFAPHQYVMNCRIERAKKLLGSTNKTIEQICTQVGFQSQSHFTNVFRKLMGITPRVY
HHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHH
REQVKT
HHHHCC
>Mature Secondary Structure
MRMMSEEKILSVDFTQEDAYTEILPRSPLVSSYHAQWQGLRLDVHQQPGHETPEHSPQQH
CCCCCCCCEEEEECCCCHHHHHHCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCCCCCE
VLTVSLDQQIVRLERILDGRLQYENIAKGDVAIIPAQTHHISRWQSETKFLVLSVEPAFF
EEEEEHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCHHHHHHHCCCCEEEEEEECHHHH
TRMVIEAGDLQKIEIKPRFAAPDPLVQQIGLALQTELESEHKGSSIYIESLTTTLCIHLL
HHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHH
KHYCVTGGTILDDHHHKGLSHWKLRQAISYIHENLDQDLTLVDISTAVGMSMYYFSRQFK
HHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH
QSTGFAPHQYVMNCRIERAKKLLGSTNKTIEQICTQVGFQSQSHFTNVFRKLMGITPRVY
HHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHH
REQVKT
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]