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The map label for this gene is 17230641

Identifier: 17230641

GI number: 17230641

Start: 3811415

End: 3812374

Strand: Reverse

Name: 17230641

Synonym: all3149

Alternate gene names: NA

Gene position: 3812374-3811415 (Counterclockwise)

Preceding gene: 17230643

Following gene: 17230640

Centisome position: 59.44

GC content: 47.08

Gene sequence:

>960_bases
ATGGCAATTACTATCGATTCCGCCCGTCGTATCTTCCCTAACACATTACAGGCTGATGCAGTGCCAGCGCTGACTGCACG
ATTCAACCAACTCAGTGCAGAAGATCAACTGGCATGGACATGGTTCGCTTTCTTAGAGATGGGCAAAACTATTACTGTTG
CAGCGCCTGGTGCAGCTAGTATGCAGTTTGCGGAAGGTATCCTCAAGCAAATCAAGGAAATGACCTTTGAGGAACAAACT
CAGGTTATGTGCGACCTGGCAAACCACACAGATACGCCCATTTGCCGCACCTATGCTACTTGGTCGCCTAATATCAAGTT
AGGTTTTTGGAATCAACTGGGAGAATGGATGGAGCAAGGTGCCGTTGCGCCAATTCCTGCTGGCTATCAGCTTTCAGCCA
ATGCTAATGCAGTATTGGAAACCCTGAAAAGTCTGGATCAAGGACAACAGATTACCGTCCTCCGCAGTTCCGTTGTAGAT
ATGGGATTTGATGCAGCTAAACTAGACGGCTACACAAGAGTTGCTGAACCATTAGTTGCACCTAAAGATATTTCCCAGCG
TGTTCAAGTCACCATTGAGGGAATTAATAATTCCACTGTGTTGAATTACATGAACAACTTGAACGCCAATGACTTTGATG
AACTGATCAAGTTGTTCGTGGAGGATGGAGCTTTGCAGCCTCCCTTCCAAAGACCAATCGTTGGTAAGGATGCAATTCTG
CGGTTCTTCCGTGAAGAATGCCAGAACCTCAACTTGCTTCCAGAGCGCGGTGTGGCTGAACCCGCAGACGATGGCTATAC
TCAGGTGAAAGTGACAGGTAAAGTTCAGACCCCTTGGTTTGGTGCAGCAGTAGGGATGAACATGGCTTGGCGCTTCTTGC
TCAACCCCCAAGGTAAAATCTTCTTCGTAGCTATTGACTTGTTAGCCTCTCCCAAAGAACTTTTGAACTTGGTTCGCTAA

Upstream 100 bases:

>100_bases
AAACTTTTGTGATAGTTTGGACACAGGAGCAAAACTGTATCTTCTGAAACTTTTTGCTTCGCCTCTTGTCAGGTAAAAAC
TTAGCTAGGTAGCTCTCTGT

Downstream 100 bases:

>100_bases
AGGAAAATAACAAAACAACTAAATAGCTGATTATCGCGGTGAGCGCTCTCTTAACGAAGGGCGCTCAATTATTCTGAGCA
AACGCAATTAATTAATACAA

Product: hypothetical protein

Products: NA

Alternate protein names: OCP; RCP [H]

Number of amino acids: Translated: 319; Mature: 318

Protein sequence:

>319_residues
MAITIDSARRIFPNTLQADAVPALTARFNQLSAEDQLAWTWFAFLEMGKTITVAAPGAASMQFAEGILKQIKEMTFEEQT
QVMCDLANHTDTPICRTYATWSPNIKLGFWNQLGEWMEQGAVAPIPAGYQLSANANAVLETLKSLDQGQQITVLRSSVVD
MGFDAAKLDGYTRVAEPLVAPKDISQRVQVTIEGINNSTVLNYMNNLNANDFDELIKLFVEDGALQPPFQRPIVGKDAIL
RFFREECQNLNLLPERGVAEPADDGYTQVKVTGKVQTPWFGAAVGMNMAWRFLLNPQGKIFFVAIDLLASPKELLNLVR

Sequences:

>Translated_319_residues
MAITIDSARRIFPNTLQADAVPALTARFNQLSAEDQLAWTWFAFLEMGKTITVAAPGAASMQFAEGILKQIKEMTFEEQT
QVMCDLANHTDTPICRTYATWSPNIKLGFWNQLGEWMEQGAVAPIPAGYQLSANANAVLETLKSLDQGQQITVLRSSVVD
MGFDAAKLDGYTRVAEPLVAPKDISQRVQVTIEGINNSTVLNYMNNLNANDFDELIKLFVEDGALQPPFQRPIVGKDAIL
RFFREECQNLNLLPERGVAEPADDGYTQVKVTGKVQTPWFGAAVGMNMAWRFLLNPQGKIFFVAIDLLASPKELLNLVR
>Mature_318_residues
AITIDSARRIFPNTLQADAVPALTARFNQLSAEDQLAWTWFAFLEMGKTITVAAPGAASMQFAEGILKQIKEMTFEEQTQ
VMCDLANHTDTPICRTYATWSPNIKLGFWNQLGEWMEQGAVAPIPAGYQLSANANAVLETLKSLDQGQQITVLRSSVVDM
GFDAAKLDGYTRVAEPLVAPKDISQRVQVTIEGINNSTVLNYMNNLNANDFDELIKLFVEDGALQPPFQRPIVGKDAILR
FFREECQNLNLLPERGVAEPADDGYTQVKVTGKVQTPWFGAAVGMNMAWRFLLNPQGKIFFVAIDLLASPKELLNLVR

Specific function: Acts as a photo-protectant. Essential for inhibiting white and blue-green light non-photochemical quenching (NPQ). Binding carotenoids improves OCP's intrinsic photoprotectant activity by broadening its absorption spectrum and facilitating the dissipation

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane. Note=Associated with the phycobilisome [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002075
- InterPro:   IPR015233 [H]

Pfam domain/function: PF09150 Carot_N; PF02136 NTF2 [H]

EC number: NA

Molecular weight: Translated: 35347; Mature: 35216

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITIDSARRIFPNTLQADAVPALTARFNQLSAEDQLAWTWFAFLEMGKTITVAAPGAAS
CEEEECCCHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCHH
MQFAEGILKQIKEMTFEEQTQVMCDLANHTDTPICRTYATWSPNIKLGFWNQLGEWMEQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCC
AVAPIPAGYQLSANANAVLETLKSLDQGQQITVLRSSVVDMGFDAAKLDGYTRVAEPLVA
CCCCCCCCEEECCCHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCHHHHCCHHHHHHCCCC
PKDISQRVQVTIEGINNSTVLNYMNNLNANDFDELIKLFVEDGALQPPFQRPIVGKDAIL
CHHHCCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
RFFREECQNLNLLPERGVAEPADDGYTQVKVTGKVQTPWFGAAVGMNMAWRFLLNPQGKI
HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHEEEEEECCCCCE
FFVAIDLLASPKELLNLVR
EEEEEEHHCCHHHHHHHCC
>Mature Secondary Structure 
AITIDSARRIFPNTLQADAVPALTARFNQLSAEDQLAWTWFAFLEMGKTITVAAPGAAS
EEEECCCHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCHH
MQFAEGILKQIKEMTFEEQTQVMCDLANHTDTPICRTYATWSPNIKLGFWNQLGEWMEQG
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEECHHHHHHHHHCC
AVAPIPAGYQLSANANAVLETLKSLDQGQQITVLRSSVVDMGFDAAKLDGYTRVAEPLVA
CCCCCCCCEEECCCHHHHHHHHHHHCCCCEEEHHHHHHHHCCCCHHHHCCHHHHHHCCCC
PKDISQRVQVTIEGINNSTVLNYMNNLNANDFDELIKLFVEDGALQPPFQRPIVGKDAIL
CHHHCCEEEEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
RFFREECQNLNLLPERGVAEPADDGYTQVKVTGKVQTPWFGAAVGMNMAWRFLLNPQGKI
HHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHEEEEEECCCCCE
FFVAIDLLASPKELLNLVR
EEEEEEHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA