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The map label for this gene is yggB [C]

Identifier: 17230512

GI number: 17230512

Start: 3661774

End: 3662766

Strand: Direct

Name: yggB [C]

Synonym: alr3020

Alternate gene names: 17230512

Gene position: 3661774-3662766 (Clockwise)

Preceding gene: 17230511

Following gene: 17230518

Centisome position: 57.09

GC content: 43.61

Gene sequence:

>993_bases
ATGAATGCAGAAATCTCCACAGCGTGGGATAAGGTTCAAAGCATGATCAACGGTTTCATTGCTTTGCTACCCAATATGGC
CTTAGCGTTGATTGTCTTTCTAATATTTTTGTTTGTTGCTAGCAGAATTAAGGCACTAGTCAAGCGATTAACTCGCAATC
GTCGTTCTGCACGGAATCTGGGATTAGTGTTAGGAAGATTAGCGCAAGGTGTAACAATTTTGATTGGGTTGTTTATCGCC
CTTTCCATTGTGATCCCCACATTTAGAGCAGGTGATTTGGTGCAACTGTTGGGAATTAGTGGTGTTGCCATTGGTTTTGC
CTTCCGCGATATTCTGCAAAACTTCCTCTCTGGGATTTTAATTCTGCTAACTGAACCTTTTCAAATCGATGACCAAATTG
TATTTAAAGGCTTTGAGGGGACTGTAGAGAATATCGAGACACGGGCAACGACAATTAGAACTTATGACGGTCGGCGGATT
GTTATTCCTAACTCTGAGTTATTTACTAATTCGGTAACTGTTAACACTGCCTTTGATAGCCGTAGATTAGAGTACGATGT
CGGTATTGGCTATGGCGATGACATGGATCTAGCCAAGCATTTGATGTTAAATGCAGTTCTTAGCATAGATGAAGTTTTAA
AAGATCCTGCGCCTGATGTACTGGCAATGGAACTTGCCGAAAGTACGGTCAATATTCGTGTGCGTTGGTGGATTAAACCA
CCACGCAGGGCAGATGATTTATCTTCGCGGGATAAGGTAATCTCTGCAATTAAGAAAACGCTTGTTGCTAACGGTATTGA
TTTACCCTTCCCAACACAACAAATTCTATTTCACGACCAAACCGAAGAGACAGATGGAAACCGCTCCCGTCAGCGTGAAG
GTTGGCCAGCCGGGAAAAGCGAAGTACCAAAGCCTCGCCGTGTCAGTGATTCGCTCAGGTTACTTGCTCAAGCGCGCGCC
TCACAAGATGGTAACGGCAAAGTAGATTCTTAA

Upstream 100 bases:

>100_bases
TCCTATATCGAAAGCAACCTAATAGTTATTTCTCCCCTTGCTTACCATACTTTTTCACATAAGTCTTGATCTAAAAACCA
AAATTAAATGAGGAAAGTTC

Downstream 100 bases:

>100_bases
ACTAACGAACGATGAAAAACTTCAAGATTAGCAAACAGTGGGATCAACTCCACTCCAGTTATCGTAAATTCAAGGGCTTA
AGACCCCTCTCTTACAAAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MNAEISTAWDKVQSMINGFIALLPNMALALIVFLIFLFVASRIKALVKRLTRNRRSARNLGLVLGRLAQGVTILIGLFIA
LSIVIPTFRAGDLVQLLGISGVAIGFAFRDILQNFLSGILILLTEPFQIDDQIVFKGFEGTVENIETRATTIRTYDGRRI
VIPNSELFTNSVTVNTAFDSRRLEYDVGIGYGDDMDLAKHLMLNAVLSIDEVLKDPAPDVLAMELAESTVNIRVRWWIKP
PRRADDLSSRDKVISAIKKTLVANGIDLPFPTQQILFHDQTEETDGNRSRQREGWPAGKSEVPKPRRVSDSLRLLAQARA
SQDGNGKVDS

Sequences:

>Translated_330_residues
MNAEISTAWDKVQSMINGFIALLPNMALALIVFLIFLFVASRIKALVKRLTRNRRSARNLGLVLGRLAQGVTILIGLFIA
LSIVIPTFRAGDLVQLLGISGVAIGFAFRDILQNFLSGILILLTEPFQIDDQIVFKGFEGTVENIETRATTIRTYDGRRI
VIPNSELFTNSVTVNTAFDSRRLEYDVGIGYGDDMDLAKHLMLNAVLSIDEVLKDPAPDVLAMELAESTVNIRVRWWIKP
PRRADDLSSRDKVISAIKKTLVANGIDLPFPTQQILFHDQTEETDGNRSRQREGWPAGKSEVPKPRRVSDSLRLLAQARA
SQDGNGKVDS
>Mature_330_residues
MNAEISTAWDKVQSMINGFIALLPNMALALIVFLIFLFVASRIKALVKRLTRNRRSARNLGLVLGRLAQGVTILIGLFIA
LSIVIPTFRAGDLVQLLGISGVAIGFAFRDILQNFLSGILILLTEPFQIDDQIVFKGFEGTVENIETRATTIRTYDGRRI
VIPNSELFTNSVTVNTAFDSRRLEYDVGIGYGDDMDLAKHLMLNAVLSIDEVLKDPAPDVLAMELAESTVNIRVRWWIKP
PRRADDLSSRDKVISAIKKTLVANGIDLPFPTQQILFHDQTEETDGNRSRQREGWPAGKSEVPKPRRVSDSLRLLAQARA
SQDGNGKVDS

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1789291, Length=259, Percent_Identity=29.7297297297297, Blast_Score=114, Evalue=9e-27,
Organism=Escherichia coli, GI1786670, Length=193, Percent_Identity=28.4974093264249, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI2367355, Length=287, Percent_Identity=25.7839721254355, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787591, Length=203, Percent_Identity=32.512315270936, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 36628; Mature: 36628

Theoretical pI: Translated: 9.76; Mature: 9.76

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAEISTAWDKVQSMINGFIALLPNMALALIVFLIFLFVASRIKALVKRLTRNRRSARNL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLVLGRLAQGVTILIGLFIALSIVIPTFRAGDLVQLLGISGVAIGFAFRDILQNFLSGIL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ILLTEPFQIDDQIVFKGFEGTVENIETRATTIRTYDGRRIVIPNSELFTNSVTVNTAFDS
HHHCCCCCCCCHHEEECCCCHHHHHHHHHHEEEEECCCEEEECCCHHEECCEEEEECCCC
RRLEYDVGIGYGDDMDLAKHLMLNAVLSIDEVLKDPAPDVLAMELAESTVNIRVRWWIKP
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEEEEEECC
PRRADDLSSRDKVISAIKKTLVANGIDLPFPTQQILFHDQTEETDGNRSRQREGWPAGKS
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHCCCCCCCCC
EVPKPRRVSDSLRLLAQARASQDGNGKVDS
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MNAEISTAWDKVQSMINGFIALLPNMALALIVFLIFLFVASRIKALVKRLTRNRRSARNL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLVLGRLAQGVTILIGLFIALSIVIPTFRAGDLVQLLGISGVAIGFAFRDILQNFLSGIL
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
ILLTEPFQIDDQIVFKGFEGTVENIETRATTIRTYDGRRIVIPNSELFTNSVTVNTAFDS
HHHCCCCCCCCHHEEECCCCHHHHHHHHHHEEEEECCCEEEECCCHHEECCEEEEECCCC
RRLEYDVGIGYGDDMDLAKHLMLNAVLSIDEVLKDPAPDVLAMELAESTVNIRVRWWIKP
CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCEEEEEEEEECC
PRRADDLSSRDKVISAIKKTLVANGIDLPFPTQQILFHDQTEETDGNRSRQREGWPAGKS
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCHHHCCCCCCCCC
EVPKPRRVSDSLRLLAQARASQDGNGKVDS
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]