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The map label for this gene is ydiU [C]

Identifier: 17230368

GI number: 17230368

Start: 3507043

End: 3508500

Strand: Reverse

Name: ydiU [C]

Synonym: all2876

Alternate gene names: 17230368

Gene position: 3508500-3507043 (Counterclockwise)

Preceding gene: 17230375

Following gene: 17230367

Centisome position: 54.7

GC content: 41.56

Gene sequence:

>1458_bases
ATGACTTTAGCGGAAACTTTCAATACCGAAAATCATGGCAATCCTCTGATTACCCTGAACTACGAACCAGCCTTAGAATC
TTTGGGTAACGACTACTATGATGAGGTGACAGCAGCCGAATTTCCCCAACTTACCCTACGCTGGCGGAATGACGCGATAT
TACCCAGGCTGGGACTAAACCCGCAAATAGTGACAGATGAAGATTTCATCACAGCTTTTGGTCTATTCCAAGGACGCAAG
CCATTGTTAGCACTGCGTTACCACGGCTATCAATTCGGTGAGTATAACCCCAACTTGGGCGATGGTAGAGGCTTTTTGTA
TGGACAAGTTCGCGGTACTGATGGCGAACTGTATGACTTTGGCACCAAAGGTTCTGGAAGAACACCCTATTCTCGTGGTG
GTGACGGAATGCTGACACTCAAAGGTGGTGTGAGAGAGGTTTTAGCCGCCGAAGCATTACACCAATTAGGAGTTAGAACC
TCTCGCTGTCTCACCATGATAGAAACGGGTTTAGGTTTATGGCGTGGTGATGAACCTTCACCTACCCGTTCATCCGTGAT
GGTAAGAATGAACAAGTCTCATATCCGTTTTGGAACTTTTGAGCGTCTGCACTATTTTCAACGCTCAGATTTAATTAAAA
AACTGTTAGATCATGTAATTGAGCATTATTACCGACACTTAGCCCATGAATCAGATAAGTATGCTTTATTCTATGCGGAA
CTAGTGAAACGGGTAGCAGAATTAGTCGCTCAATGGATGGCCGCAGGCTTTTGTCATGCAGTTCTCAACACTGACAATAT
GTCAATTACTGGGGAAAGCTTTGACTACGGGCCTTATGCGTTTATTCCTACTTATAATCCCTACTTCACGGCTGCGTATT
TTGATTATTACGGACGCTATTGTTACATCCAACAACCAAGTATTTGTCAGTGGAACCTGGAAATGCTGCAAGTCCCATTA
AGAGCAGTTATTGATAAAGCTGATATGGAAGCAGGATTAGCCAAATTTAGTGAGTATTGCCATGCAGAATATAACTCTTT
GATGTTGAAAAAATTAGGCTTTGAGGAGTTAAAGACCCCAGAAGCGGAAGAACTTTTAAGCCTCACCCTCAAGTTCTTAC
AAGAAAGTCAAGTTGGCTATCACCAGTTTTTCTATGAGATGGCGCGTACATTTTCAATTAAATGGAGAGATGAGCCAGGA
CTAGTATTAAGTGGTTCAGATATTGTTCCTCCATCAGGTACAGATGCAAATTTTGATAATTGGTGTGTGCTTTACCATAA
AATTCTGAATAATTTCGACTATGAACAAGTGAAGATAATTGCTCAGAATCTAACTCACTATAATCCAAAAACTTCATTAT
TAAGACCCACAATCGAAGAAGCTTGGGAACCGATTGTTCAAGAAGATAATTGGCAACCTTTTTATGATTTAGTTAAGAGC
ATTCAATCAAGAGGCTAG

Upstream 100 bases:

>100_bases
TTTTTATACTTACTGAATTTGTAAATTAAACTTGGCGATTCACAAGAACTTGCTGAGGACGATAGTATTGAGGGAAGAAT
CAATTAAGCCCGGCTTATCA

Downstream 100 bases:

>100_bases
TAACGTAAACAGAAGGTTATTAAGGCGGGATATCCTACGGGGAGGCTTACGCCGACCCAGGGACGCAAGCTAGAGAAATC
AAATTTCATACAAAGTAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MTLAETFNTENHGNPLITLNYEPALESLGNDYYDEVTAAEFPQLTLRWRNDAILPRLGLNPQIVTDEDFITAFGLFQGRK
PLLALRYHGYQFGEYNPNLGDGRGFLYGQVRGTDGELYDFGTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHQLGVRT
SRCLTMIETGLGLWRGDEPSPTRSSVMVRMNKSHIRFGTFERLHYFQRSDLIKKLLDHVIEHYYRHLAHESDKYALFYAE
LVKRVAELVAQWMAAGFCHAVLNTDNMSITGESFDYGPYAFIPTYNPYFTAAYFDYYGRYCYIQQPSICQWNLEMLQVPL
RAVIDKADMEAGLAKFSEYCHAEYNSLMLKKLGFEELKTPEAEELLSLTLKFLQESQVGYHQFFYEMARTFSIKWRDEPG
LVLSGSDIVPPSGTDANFDNWCVLYHKILNNFDYEQVKIIAQNLTHYNPKTSLLRPTIEEAWEPIVQEDNWQPFYDLVKS
IQSRG

Sequences:

>Translated_485_residues
MTLAETFNTENHGNPLITLNYEPALESLGNDYYDEVTAAEFPQLTLRWRNDAILPRLGLNPQIVTDEDFITAFGLFQGRK
PLLALRYHGYQFGEYNPNLGDGRGFLYGQVRGTDGELYDFGTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHQLGVRT
SRCLTMIETGLGLWRGDEPSPTRSSVMVRMNKSHIRFGTFERLHYFQRSDLIKKLLDHVIEHYYRHLAHESDKYALFYAE
LVKRVAELVAQWMAAGFCHAVLNTDNMSITGESFDYGPYAFIPTYNPYFTAAYFDYYGRYCYIQQPSICQWNLEMLQVPL
RAVIDKADMEAGLAKFSEYCHAEYNSLMLKKLGFEELKTPEAEELLSLTLKFLQESQVGYHQFFYEMARTFSIKWRDEPG
LVLSGSDIVPPSGTDANFDNWCVLYHKILNNFDYEQVKIIAQNLTHYNPKTSLLRPTIEEAWEPIVQEDNWQPFYDLVKS
IQSRG
>Mature_484_residues
TLAETFNTENHGNPLITLNYEPALESLGNDYYDEVTAAEFPQLTLRWRNDAILPRLGLNPQIVTDEDFITAFGLFQGRKP
LLALRYHGYQFGEYNPNLGDGRGFLYGQVRGTDGELYDFGTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHQLGVRTS
RCLTMIETGLGLWRGDEPSPTRSSVMVRMNKSHIRFGTFERLHYFQRSDLIKKLLDHVIEHYYRHLAHESDKYALFYAEL
VKRVAELVAQWMAAGFCHAVLNTDNMSITGESFDYGPYAFIPTYNPYFTAAYFDYYGRYCYIQQPSICQWNLEMLQVPLR
AVIDKADMEAGLAKFSEYCHAEYNSLMLKKLGFEELKTPEAEELLSLTLKFLQESQVGYHQFFYEMARTFSIKWRDEPGL
VLSGSDIVPPSGTDANFDNWCVLYHKILNNFDYEQVKIIAQNLTHYNPKTSLLRPTIEEAWEPIVQEDNWQPFYDLVKSI
QSRG

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family [H]

Homologues:

Organism=Homo sapiens, GI32880229, Length=358, Percent_Identity=34.6368715083799, Blast_Score=195, Evalue=8e-50,
Organism=Escherichia coli, GI1787999, Length=318, Percent_Identity=37.7358490566038, Blast_Score=228, Evalue=5e-61,
Organism=Saccharomyces cerevisiae, GI6325034, Length=285, Percent_Identity=31.9298245614035, Blast_Score=137, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003846 [H]

Pfam domain/function: PF02696 UPF0061 [H]

EC number: NA

Molecular weight: Translated: 55720; Mature: 55588

Theoretical pI: Translated: 5.33; Mature: 5.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLAETFNTENHGNPLITLNYEPALESLGNDYYDEVTAAEFPQLTLRWRNDAILPRLGLN
CCCCCCCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
PQIVTDEDFITAFGLFQGRKPLLALRYHGYQFGEYNPNLGDGRGFLYGQVRGTDGELYDF
CCEECCCHHHHHHHHHCCCCCEEEEEECCEECCCCCCCCCCCCEEEEEEEECCCCCEEEC
GTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHQLGVRTSRCLTMIETGLGLWRGDEPS
CCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC
PTRSSVMVRMNKSHIRFGTFERLHYFQRSDLIKKLLDHVIEHYYRHLAHESDKYALFYAE
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHH
LVKRVAELVAQWMAAGFCHAVLNTDNMSITGESFDYGPYAFIPTYNPYFTAAYFDYYGRY
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEECCCCCHHHHHHHHHHCCE
CYIQQPSICQWNLEMLQVPLRAVIDKADMEAGLAKFSEYCHAEYNSLMLKKLGFEELKTP
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
EAEELLSLTLKFLQESQVGYHQFFYEMARTFSIKWRDEPGLVLSGSDIVPPSGTDANFDN
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCEEEECCCCCCCCCCCCCCCH
WCVLYHKILNNFDYEQVKIIAQNLTHYNPKTSLLRPTIEEAWEPIVQEDNWQPFYDLVKS
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHCCCCCCHHHHHHHH
IQSRG
HHCCC
>Mature Secondary Structure 
TLAETFNTENHGNPLITLNYEPALESLGNDYYDEVTAAEFPQLTLRWRNDAILPRLGLN
CCCCCCCCCCCCCCEEEEECCHHHHHCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
PQIVTDEDFITAFGLFQGRKPLLALRYHGYQFGEYNPNLGDGRGFLYGQVRGTDGELYDF
CCEECCCHHHHHHHHHCCCCCEEEEEECCEECCCCCCCCCCCCEEEEEEEECCCCCEEEC
GTKGSGRTPYSRGGDGMLTLKGGVREVLAAEALHQLGVRTSRCLTMIETGLGLWRGDEPS
CCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCC
PTRSSVMVRMNKSHIRFGTFERLHYFQRSDLIKKLLDHVIEHYYRHLAHESDKYALFYAE
CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHH
LVKRVAELVAQWMAAGFCHAVLNTDNMSITGESFDYGPYAFIPTYNPYFTAAYFDYYGRY
HHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEECCCCCHHHHHHHHHHCCE
CYIQQPSICQWNLEMLQVPLRAVIDKADMEAGLAKFSEYCHAEYNSLMLKKLGFEELKTP
EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
EAEELLSLTLKFLQESQVGYHQFFYEMARTFSIKWRDEPGLVLSGSDIVPPSGTDANFDN
CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEECCCCCEEEECCCCCCCCCCCCCCCH
WCVLYHKILNNFDYEQVKIIAQNLTHYNPKTSLLRPTIEEAWEPIVQEDNWQPFYDLVKS
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHCCCCCCHHHHHHHH
IQSRG
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA