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The map label for this gene is cph2 [H]

Identifier: 17230366

GI number: 17230366

Start: 3499902

End: 3500894

Strand: Reverse

Name: cph2 [H]

Synonym: all2874

Alternate gene names: 17230366

Gene position: 3500894-3499902 (Counterclockwise)

Preceding gene: 17230367

Following gene: 17230363

Centisome position: 54.58

GC content: 44.21

Gene sequence:

>993_bases
ATGAAAAATACAGTTCCAGAGAGCCAATGCCTCATTCTCATTGTCGATGATGAACCATTCATCCGAGCGCAGTTACGGCT
CTCTCTACAATGCGAAGGCTACCGCACAGCCGAGGCTGAGGATGGTAGACAGGCTTTGGCTATTTTTCAAGAACTGCAAC
CTGATATCGTACTGCTGGATGCAATCATGCCTGACCTAGACGGCTTTGAGTGTTGCACTCGTTTGCAGTTATTAGAAGAC
GGTAAATACACACCAGTCTTAATGATTACTGGACTAGAGGATCAAGAATCAGTTGATCGGGCATTTGAGGTGGGAGCAAT
TGATTATGTTACCAAACCCATTCACTGGCCAGTTTTGCGTCAACGGGTCAAACGTTTAATTCAGCAATTCCATCTCCAAC
AAAAGCTAGAAGCGGCTAACAGAGAATTGCAAAGGTTGGTGACGATTGATGAGTTAACTCAAGTAGCCAACCGCCGCAGA
TTTGAGGAATATTGCGCTCAAGAGTGGCAACGCATGGCGCGGGATCAACTACCGTTATCTCTGATTTTGTGTGATGTCGA
TTTTTTTAAAGCTTACAACGATACTTATGGTCATCGGGCGGGCGATCGCTGTTTACAATTGGTGGCAAAAGCGATCGAAA
GCTGCGTTAATCGGCCTGCTGATGTAGTCGCTCGTTATGGTGGCGAAGAATTTGCTGTGATCCTACCCAGAACATATCCT
GATGGAGCTATTCATTTAGCTAACGCTATCTGCACTGCTGTCAGAGAATTGCAAATTACCCATCTCACTTCTCAAGCTAA
TACTTGTGTCACTATAAGTGCTGGGGTAGCTACAGAAATTCCCGTACCCAACTCTGATTTTCAAGAAATTATTAATGCAG
CCGATCGCGCATTATATCAAGCCAAAATGACCGGACGTGATGGCTGTCAACAATATATTAAACAATCATCCTCTCCTGTT
TATTTTTTAAATGCTCACCATCGACTAGCTTAA

Upstream 100 bases:

>100_bases
ATAACAATCTAGAGGGTTGTGTAGAACTTGGCTCACAGTTACGTCAAGAGTATGAACTAGTCCAAACGGCTTTGCACAGA
GAAGTGAACAAGGAGACATC

Downstream 100 bases:

>100_bases
GCAAGAAGTTAGAAGCTAAGGTAGATATTTCCTTCAATAACCGATTACCAATTCGGTTGATAAACTTGACCAAATGTATG
ATCAGGGTGAATCTCAACTA

Product: two-component response regulator

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 330; Mature: 330

Protein sequence:

>330_residues
MKNTVPESQCLILIVDDEPFIRAQLRLSLQCEGYRTAEAEDGRQALAIFQELQPDIVLLDAIMPDLDGFECCTRLQLLED
GKYTPVLMITGLEDQESVDRAFEVGAIDYVTKPIHWPVLRQRVKRLIQQFHLQQKLEAANRELQRLVTIDELTQVANRRR
FEEYCAQEWQRMARDQLPLSLILCDVDFFKAYNDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEFAVILPRTYP
DGAIHLANAICTAVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEIINAADRALYQAKMTGRDGCQQYIKQSSSPV
YFLNAHHRLA

Sequences:

>Translated_330_residues
MKNTVPESQCLILIVDDEPFIRAQLRLSLQCEGYRTAEAEDGRQALAIFQELQPDIVLLDAIMPDLDGFECCTRLQLLED
GKYTPVLMITGLEDQESVDRAFEVGAIDYVTKPIHWPVLRQRVKRLIQQFHLQQKLEAANRELQRLVTIDELTQVANRRR
FEEYCAQEWQRMARDQLPLSLILCDVDFFKAYNDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEFAVILPRTYP
DGAIHLANAICTAVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEIINAADRALYQAKMTGRDGCQQYIKQSSSPV
YFLNAHHRLA
>Mature_330_residues
MKNTVPESQCLILIVDDEPFIRAQLRLSLQCEGYRTAEAEDGRQALAIFQELQPDIVLLDAIMPDLDGFECCTRLQLLED
GKYTPVLMITGLEDQESVDRAFEVGAIDYVTKPIHWPVLRQRVKRLIQQFHLQQKLEAANRELQRLVTIDELTQVANRRR
FEEYCAQEWQRMARDQLPLSLILCDVDFFKAYNDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEFAVILPRTYP
DGAIHLANAICTAVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEIINAADRALYQAKMTGRDGCQQYIKQSSSPV
YFLNAHHRLA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=179, Percent_Identity=34.0782122905028, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87081881, Length=186, Percent_Identity=37.6344086021505, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI145693134, Length=196, Percent_Identity=32.1428571428571, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI87082007, Length=195, Percent_Identity=34.8717948717949, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=37.6543209876543, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=37.037037037037, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=34.0782122905028, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788550, Length=125, Percent_Identity=35.2, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1787262, Length=159, Percent_Identity=37.1069182389937, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1787541, Length=168, Percent_Identity=33.3333333333333, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1787229, Length=245, Percent_Identity=26.9387755102041, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786599, Length=118, Percent_Identity=33.8983050847458, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1787375, Length=118, Percent_Identity=30.5084745762712, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787056, Length=158, Percent_Identity=31.6455696202532, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693157, Length=111, Percent_Identity=35.1351351351351, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788394, Length=140, Percent_Identity=30.7142857142857, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI87081974, Length=153, Percent_Identity=29.4117647058824, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788956, Length=173, Percent_Identity=31.2138728323699, Blast_Score=62, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 37399; Mature: 37399

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNTVPESQCLILIVDDEPFIRAQLRLSLQCEGYRTAEAEDGRQALAIFQELQPDIVLLD
CCCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEHH
AIMPDLDGFECCTRLQLLEDGKYTPVLMITGLEDQESVDRAFEVGAIDYVTKPIHWPVLR
HHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCCCHHHH
QRVKRLIQQFHLQQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQRMARDQLPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LILCDVDFFKAYNDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEFAVILPRTYP
EEEECHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCC
DGAIHLANAICTAVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEIINAADRALYQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHH
AKMTGRDGCQQYIKQSSSPVYFLNAHHRLA
HHCCCHHHHHHHHHCCCCCEEEECCCCCCC
>Mature Secondary Structure
MKNTVPESQCLILIVDDEPFIRAQLRLSLQCEGYRTAEAEDGRQALAIFQELQPDIVLLD
CCCCCCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCEEEHH
AIMPDLDGFECCTRLQLLEDGKYTPVLMITGLEDQESVDRAFEVGAIDYVTKPIHWPVLR
HHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCHHHHHCCCCCHHHH
QRVKRLIQQFHLQQKLEAANRELQRLVTIDELTQVANRRRFEEYCAQEWQRMARDQLPLS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
LILCDVDFFKAYNDTYGHRAGDRCLQLVAKAIESCVNRPADVVARYGGEEFAVILPRTYP
EEEECHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCC
DGAIHLANAICTAVRELQITHLTSQANTCVTISAGVATEIPVPNSDFQEIINAADRALYQ
CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEECCCCCHHHHHHHHHHHHHHHH
AKMTGRDGCQQYIKQSSSPVYFLNAHHRLA
HHCCCHHHHHHHHHCCCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]